Result for FB3A4ABCEA4CC2786CC5283447929633E61049BC

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Children (22)

Query result

Key Value
MD575B8FBC1F4B8DBA9DE75F2F4C8AAD0E5
PackageArchs390
PackageDescription Rsolid is an R package for normalizing fluorescent intensity data from ABI/SOLiD second generation sequencing platform. It has been observed that the color-calls provided by factory software contain technical artifacts, where the proportions of colors called are extremely variable across sequencing cycles. Under the random DNA fragmentation assumption, these proportions should be equal across sequencing cycles and proportional to the dinucleotide frequencies of the sample. Rsolid implements a version of the quantile normalization algorithm that transforms the intensity values before calling colors. Results show that after normalization, the total number of mappable reads increases by around 5%, and number of perfectly mapped reads increases by 10%. Moreover a 2-5% reduction in overall error rates is observed, with a 2-6% reduction in the rate of valid adjacent color mis-matches. The latter is important, since it leads to a decrease in false-positive SNP calls. The normalization algorithm is computationally efficient. In a test we are able to process 300 million reads in 2 hours using 10 computer cluster nodes. The engine functions of the package are written in C for better performance.
PackageMaintainerFedora Project
PackageNameR-Rsolid
PackageRelease9.fc19
PackageVersion0.9.31
SHA-1FB3A4ABCEA4CC2786CC5283447929633E61049BC
SHA-2568F647418A47024E16C4B2892F8913CDF3E15D23567F68E9FC5E3974F82ED3705
hashlookup:children-total22
hashlookup:trust50

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Children (Total: 22)

The searched file hash includes 22 children files known and seen by metalookup. A sample is included below:

Key Value
FileName./usr/lib/R/library/Rsolid/R/Rsolid.rdx
FileSize316
MD5833AD823A30B97A673C6BFB1AF7F19B1
SHA-100B23C801F969D925D2EABD6CCA845A7D13AA50B
SHA-256711422BF408D36493E5B9B22244960CB9D9D84B7C1D7A246613F95D7DA4D25FE
SSDEEP6:Xtm1EyNE5agT+p4RNaZKIboc7sLjc3EMfv1KQIOW1fbf5QpuBQln/:XsOyS5agTbSKIEasHOEMn1id75QpuB0/
TLSHT135E07D12DC385200D175053AE5904012C2ADCD04824225BFA20B327918A8A61AD28FE9
Key Value
FileName./usr/lib64/R/library/Rsolid/INDEX
FileSize175
MD5D454BC562761C02412D381C9A347C69C
SHA-1177007733670BF451339D4FB30F6C2632B2E4258
SHA-256BC1CD3489BA8A37B576D916B24400DF8A7F231E00DB0D0981B1AA4CA93CF557D
SSDEEP3:Yp//aLRMJgVEJw18KElKXvGQ1xWxQT3/bCFY:sMMBJ+8KrXvaQTCY
TLSHT176C092B3E2984E22A93BA15758C88BA041B572333B4A6A8F7C1EA4401B4206036367B8
Key Value
FileName./usr/lib64/R/library/Rsolid/data/prop.Hs.rda
FileSize97
MD52ACB03264FA6AB75C0F89FD9FCA99975
SHA-118F0EB0CC822D137117CBB2B77E065E1417DF61A
SHA-256D531C4D7D7107A4953A560CE5897AF646E1A1D8EC05D462E8C6474F850140BC8
SSDEEP3:FttsdFtD3L5WS1KKmrOrDOIJ/n:XtgLUGPVJ/n
TLSHT1C6B01298808A3410D0CACC312010099A11D7B401461C2CCAA2200199C0982C7CB5D92C
Key Value
FileName./usr/lib/R/library/Rsolid/R/Rsolid.rdb
FileSize4820
MD5F9FCCFA587D728FCA30C3C3D7B261384
SHA-1193B90FC999051B11A1ACB1AD709B129E8B0444A
SHA-2560082B0D67ECD20F82D3FE7A8A2FA901821D7B59B0FC3F91261B8399211703343
SSDEEP96:9JD4AgvcGnstEPboChJDvecd/YK0+DHcS6igwUnG83bCPy5bnN5n0ZhnyhL5bnSL:ziUGIEPkCnDvew/anrbLCPyWZ1Y5bStt
TLSHT192A17EA915E46167FA90E900E290A5DFF70E12179C293EBB2142F269327A479CFA4316
Key Value
CRC32375C6D7B
FileName./usr/lib/R/site-library/Zelig/html/R.css
FileSize1179
MD5444535B9CB76DDFF1BAB1E1865A3FB14
OpSystemCode362
ProductCode13543
RDS:package_id182052
SHA-11C99E2730C58AC3191F063F2F79C505D2E890397
SHA-256E0A68E98CA3B506E8181A17634C18CAF903F4CDF983105B36E2D7DFF7E2E30D8
SSDEEP24:5zUURQcpMs91Ep9swJ1Epk61Ep0p4G1EU1Ep0V42Xm4wi54u:5gdkqtCpiXCVQ9u
SpecialCode
TLSHT1E821D6529B6D000AB77F49413A279739429494BDDD6A5F3C30ADB8A4FF81470739AB42
dbnsrl_modern_rds
insert-timestamp1679424460.1894357
sourceRDS.db
tar:gnamewheel
tar:unameroot
Key Value
FileName./usr/lib/R/site-library/effects/R/effects
FileSize1056
MD5EBF0FC819595D631B8BF280C4B049940
RDS:package_id182052
SHA-11E3082B0E541341846B7B27EAC2126CAFB0E00B9
SHA-2562FB8B16BE23C820DAF2E51B7DDFEF61CA4978E561B1D228D546D1B356041F79E
SHA-512A427BB0442BB076EDD389C8553F618B54605012BDA8E62409CA657C7B000404E9E45684C03C2F4444C331A994BB48C98892DECED8153DF04654982EBF900F956
SSDEEP24:dh2pvjejSRmcyAOkHjlnAJAcEWrwYahkB1OOV0Ea:dijeuR5ysHjuecZVHC
TLSHT13911208C6410D6FB6A0104853C4F12CDE21B6763729DA091300DD52F7B09E7562F6996
insert-timestamp1679428382.0662453
mimetypetext/plain
sourceRDS.db
tar:gnamebin
tar:unameroot
Key Value
FileName./usr/lib64/R/library/Rsolid/Meta/hsearch.rds
FileSize296
MD50CCE8B81E64698A6C071B666EF47EFA0
SHA-13169EC3DBE6840C8102DE6EC710A2DB93E22EC8D
SHA-2564E39F0B72B326F26D576BFA8BA5C80FD7122A5A3150883B248AE5C4D6A429BF3
SSDEEP6:XtV3ep4adKoTiDtF1SeZmIXS+/p6YILMP6pOtOzUjuA7zFZa+ll:XX+xKoOJF1SeZmAFB6XMP6pCdySku
TLSHT1B5E0EB751102502FE0329C30E5F28BFE1C539CD88E82806A9C5DC381B88C07283A80B8
Key Value
FileName./usr/lib64/R/library/Rsolid/help/AnIndex
FileSize14
MD527F86373197F07D636A5545AFF2255A0
SHA-147E504EE5B5100037DBCF1809EA13D94F84AB65E
SHA-25653F18991FDEA62AB48EBCF22AEFE84CC4E79DED71940693E17D1D9D156BFD282
SSDEEP3:Y8cv:le
TLSH
Key Value
FileName./usr/lib64/R/library/Rsolid/help/Rsolid.rdx
FileSize144
MD55EEADC5C981174DBFCD84B976D09CE02
SHA-151A2703FE1A65E1A084034D37A57DD6CE86AED02
SHA-25693FC1C96F9DDDD35BA5A070C872E97BE03428FCB4760027FF53811DEF245D918
SSDEEP3:FttVFHKlV+Z9d1FErNEFmJvnXXpt+8esxHcMXsGBxuE+l:XtVFqPSd8rNHJPHpt+81yUBkZ
TLSHT1D5C02B08F14C7801F80EC63823547502C74B4B24400072C3F60A1F80049760CC73FB18
Key Value
FileName./usr/lib/R/library/Rsolid/DESCRIPTION
FileSize647
MD59C8930AECA05800E055D011FBFACB575
SHA-1556A457DFFADA6F8D4C469F9CF52BF5F8237311E
SHA-2567913675DED5F3AFFA58D0B73EF54B05EAEC9CF21D4604CE17DA29C211DCD8996
SSDEEP12:06+QWtHbrXFFMB2X+5XaLzcSDx1JvLyLns2799Zv5PX7JFeMfjpViFbJDsB0rJ:ontPXFF7u5WDx1JvmLnnDZv5lFe6pAFD
TLSHT153F02301CB6BE7A0D94B43CF08F4CF684A345153B7DA6464FE8E4C109B4130121536FC





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