Result for 193B90FC999051B11A1ACB1AD709B129E8B0444A

Query result

Key Value
FileName./usr/lib/R/library/Rsolid/R/Rsolid.rdb
FileSize4820
MD5F9FCCFA587D728FCA30C3C3D7B261384
SHA-1193B90FC999051B11A1ACB1AD709B129E8B0444A
SHA-2560082B0D67ECD20F82D3FE7A8A2FA901821D7B59B0FC3F91261B8399211703343
SSDEEP96:9JD4AgvcGnstEPboChJDvecd/YK0+DHcS6igwUnG83bCPy5bnN5n0ZhnyhL5bnSL:ziUGIEPkCnDvew/anrbLCPyWZ1Y5bStt
TLSHT192A17EA915E46167FA90E900E290A5DFF70E12179C293EBB2142F269327A479CFA4316
hashlookup:parent-total1
hashlookup:trust55

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Parents (Total: 1)

The searched file hash is included in 1 parent files which include package known and seen by metalookup. A sample is included below:

Key Value
MD575B8FBC1F4B8DBA9DE75F2F4C8AAD0E5
PackageArchs390
PackageDescription Rsolid is an R package for normalizing fluorescent intensity data from ABI/SOLiD second generation sequencing platform. It has been observed that the color-calls provided by factory software contain technical artifacts, where the proportions of colors called are extremely variable across sequencing cycles. Under the random DNA fragmentation assumption, these proportions should be equal across sequencing cycles and proportional to the dinucleotide frequencies of the sample. Rsolid implements a version of the quantile normalization algorithm that transforms the intensity values before calling colors. Results show that after normalization, the total number of mappable reads increases by around 5%, and number of perfectly mapped reads increases by 10%. Moreover a 2-5% reduction in overall error rates is observed, with a 2-6% reduction in the rate of valid adjacent color mis-matches. The latter is important, since it leads to a decrease in false-positive SNP calls. The normalization algorithm is computationally efficient. In a test we are able to process 300 million reads in 2 hours using 10 computer cluster nodes. The engine functions of the package are written in C for better performance.
PackageMaintainerFedora Project
PackageNameR-Rsolid
PackageRelease9.fc19
PackageVersion0.9.31
SHA-1FB3A4ABCEA4CC2786CC5283447929633E61049BC
SHA-2568F647418A47024E16C4B2892F8913CDF3E15D23567F68E9FC5E3974F82ED3705