Result for F218D76BEAD56B125B7F89EC98695D35DDBE2E53

Query result

Key Value
MD5BA1601DC6DC119FB8F7BA2820962A942
PackageArchaarch64
PackageDescription Rsolid is an R package for normalizing fluorescent intensity data from ABI/SOLiD second generation sequencing platform. It has been observed that the color-calls provided by factory software contain technical artifacts, where the proportions of colors called are extremely variable across sequencing cycles. Under the random DNA fragmentation assumption, these proportions should be equal across sequencing cycles and proportional to the dinucleotide frequencies of the sample. Rsolid implements a version of the quantile normalization algorithm that transforms the intensity values before calling colors. Results show that after normalization, the total number of mappable reads increases by around 5%, and number of perfectly mapped reads increases by 10%. Moreover a 2-5% reduction in overall error rates is observed, with a 2-6% reduction in the rate of valid adjacent color mis-matches. The latter is important, since it leads to a decrease in false-positive SNP calls. The normalization algorithm is computationally efficient. In a test we are able to process 300 million reads in 2 hours using 10 computer cluster nodes. The engine functions of the package are written in C for better performance.
PackageMaintainerFedora Project
PackageNameR-Rsolid
PackageRelease14.fc22
PackageVersion0.9.31
SHA-1F218D76BEAD56B125B7F89EC98695D35DDBE2E53
SHA-256721ED745E0999C1EA83D4F8FF14B421155D9DADE15D84AEA547DDF40087AF29F
hashlookup:children-total22
hashlookup:trust50

Network graph view

Children (Total: 22)

The searched file hash includes 22 children files known and seen by metalookup. A sample is included below:

Key Value
FileName./usr/lib64/R/library/Rsolid/R/Rsolid.rdb
FileSize4859
MD5C86BE4F075F2297CCFCC1C040C57107E
SHA-106B81D26AAE4323881128F5049302BAEE9D119F5
SHA-2569FD9BB814A365983F5AE5A6C7A806347FB0044B096E743B914E5BB88CB7F57C0
SSDEEP96:aTYoy5Ox7xneaBTl4b/81nvclukNjVoFjsAF3wns4mx1zGDAgbpsyu3SPLYuw:aEoy5Ox99l4bU1vlcjqaAypGRWbVuWXw
TLSHT167A17E3DCC7640CF2A60B50F92C916B096D20E64B7AA2936950387BD14DDDDC57B38BD
Key Value
FileName./usr/lib/R/site-library/acepack/Meta/nsInfo.rds
FileSize183
MD524AF634489E5994735D9DD45C337A248
SHA-108E1A6153368CA5A780D2C0EC956669CF3461F85
SHA-25698C2857600218FE64D49CD7D7A95AA63FEB860FA9A9B5473A8E153293B2C0720
SSDEEP3:FttlsdmfTgQ6c9Flz0UNOPUDhbxLwS7pHdc7/zZ02NsG/xdjdPgLaPKN6kl4L:XtBTgQ39OP8xr7pGDpgLaPey
TLSHT1ADC022D1424D94AEF880806219A232800ACA689EA8D59475D230A4C08080121A1A0BDC
Key Value
FileName./usr/lib64/R/library/Rsolid/R/Rsolid.rdx
FileSize322
MD567DF94590F9FF02F1880FE5C810D8550
SHA-1176F5712DD74E2BE78D5A934FF362E5575F210F7
SHA-2567FDE928DF90A666D6860E295043999CECD647FA31A64D08BAE5C9F2188E2D02B
SSDEEP6:XtBDdGx0fMrY7EOD4LB6L/bnMx2LrKUiU6QOiO6yEXvdUrzn8cJ78/:XBgsMiEGcB6LjjLuUiS+Fc2rznlR8/
TLSHT174E02DB8C98CC0F8E3AA0930F302212C36FD2F8120185E46CC081CC96562220C0DF20B
Key Value
FileName./usr/lib64/R/library/Rsolid/INDEX
FileSize175
MD5D454BC562761C02412D381C9A347C69C
SHA-1177007733670BF451339D4FB30F6C2632B2E4258
SHA-256BC1CD3489BA8A37B576D916B24400DF8A7F231E00DB0D0981B1AA4CA93CF557D
SSDEEP3:Yp//aLRMJgVEJw18KElKXvGQ1xWxQT3/bCFY:sMMBJ+8KrXvaQTCY
TLSHT176C092B3E2984E22A93BA15758C88BA041B572333B4A6A8F7C1EA4401B4206036367B8
Key Value
FileName./usr/lib64/R/library/Rsolid/data/prop.Hs.rda
FileSize97
MD52ACB03264FA6AB75C0F89FD9FCA99975
SHA-118F0EB0CC822D137117CBB2B77E065E1417DF61A
SHA-256D531C4D7D7107A4953A560CE5897AF646E1A1D8EC05D462E8C6474F850140BC8
SSDEEP3:FttsdFtD3L5WS1KKmrOrDOIJ/n:XtgLUGPVJ/n
TLSHT1C6B01298808A3410D0CACC312010099A11D7B401461C2CCAA2200199C0982C7CB5D92C
Key Value
CRC32375C6D7B
FileName./usr/lib/R/site-library/Zelig/html/R.css
FileSize1179
MD5444535B9CB76DDFF1BAB1E1865A3FB14
OpSystemCode362
ProductCode13543
RDS:package_id182052
SHA-11C99E2730C58AC3191F063F2F79C505D2E890397
SHA-256E0A68E98CA3B506E8181A17634C18CAF903F4CDF983105B36E2D7DFF7E2E30D8
SSDEEP24:5zUURQcpMs91Ep9swJ1Epk61Ep0p4G1EU1Ep0V42Xm4wi54u:5gdkqtCpiXCVQ9u
SpecialCode
TLSHT1E821D6529B6D000AB77F49413A279739429494BDDD6A5F3C30ADB8A4FF81470739AB42
dbnsrl_modern_rds
insert-timestamp1679424460.1894357
sourceRDS.db
tar:gnamewheel
tar:unameroot
Key Value
FileName./usr/lib/R/site-library/effects/R/effects
FileSize1056
MD5EBF0FC819595D631B8BF280C4B049940
RDS:package_id182052
SHA-11E3082B0E541341846B7B27EAC2126CAFB0E00B9
SHA-2562FB8B16BE23C820DAF2E51B7DDFEF61CA4978E561B1D228D546D1B356041F79E
SHA-512A427BB0442BB076EDD389C8553F618B54605012BDA8E62409CA657C7B000404E9E45684C03C2F4444C331A994BB48C98892DECED8153DF04654982EBF900F956
SSDEEP24:dh2pvjejSRmcyAOkHjlnAJAcEWrwYahkB1OOV0Ea:dijeuR5ysHjuecZVHC
TLSHT13911208C6410D6FB6A0104853C4F12CDE21B6763729DA091300DD52F7B09E7562F6996
insert-timestamp1679428382.0662453
mimetypetext/plain
sourceRDS.db
tar:gnamebin
tar:unameroot
Key Value
FileName./usr/lib64/R/library/Rsolid/help/Rsolid.rdx
FileSize148
MD53633E53EAD6C866351528FEC423ABC9A
SHA-134535418EFC4B3B735450EE3F480F2DDD6BB875A
SHA-256786A3206D289D017B57013520612234651606B81C9114668A58EBB4C401D4013
SSDEEP3:FttVFHvFImx9xrfDJimmoIrYvxCJa9btN1U0tDZPX4JfflF0hZIGrDPPr/:XtVFKGbHgUUa9JU0tD9Eff05TPj
TLSHT117C02BC84432781BFC30A27C10788A1441CD23264B247CE361435A1E692985441C603A
Key Value
FileName./usr/lib64/R/library/Rsolid/help/AnIndex
FileSize14
MD527F86373197F07D636A5545AFF2255A0
SHA-147E504EE5B5100037DBCF1809EA13D94F84AB65E
SHA-25653F18991FDEA62AB48EBCF22AEFE84CC4E79DED71940693E17D1D9D156BFD282
SSDEEP3:Y8cv:le
TLSH
Key Value
FileName./usr/lib64/R/library/Rsolid/Meta/links.rds
FileSize102
MD53C3D82743DEAD5B44134181EAA6519C5
SHA-1510487001830620A708B70685E393DCB4C8E0E29
SHA-256D5B11761DA8A15235CCF13B410C3E7CB22C18DC822DD077DF9340076E021AC68
SSDEEP3:FttVFHvFIkGv1zqO5u5r+n3p/xVBMXtXQ8DU2m+ZZll:XtVFKkG1WO5uxYZ5QXt3Dvm+P
TLSHT1B9B0121C41227855E5334678A2C59C3263DF10074CB205F13805341C04C4888C5A302C