Parents (Total: 11)

The searched file hash is included in 11 parent files which include package known and seen by metalookup. A sample is included below:

Key	Value
FileSize	37652
MD5	A5BA56A15C781FD9B8F016B0CB1B2A1D
PackageDescription	GNU R package for regression transformations This package provides the functions ace() and avas() for GNU R which can be used to select regression tranformations.
PackageMaintainer	Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
PackageName	r-cran-acepack
PackageSection	gnu-r
PackageVersion	1.3.3.3-1
SHA-1	7373C239F1E3644D9E6F877C7C6D0F8FB7FBF2C5
SHA-256	5A76A11087C33C4005E7A388BADCD89C05230C0533FE6AD146EC73EA6B00F5E3

Key	Value
FileSize	44574
MD5	0BAFB2F0830C556CD4CEE7F4F4175925
PackageDescription	GNU R package for regression transformations This package provides the functions ace() and avas() for GNU R which can be used to select regression tranformations.
PackageMaintainer	Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
PackageName	r-cran-acepack
PackageSection	gnu-r
PackageVersion	1.3.3.3-1
SHA-1	E0BA99672A76072B7D6A4B248223C5CDDCBCA7AC
SHA-256	38629B2E45663AE9DEFD69496E380FD091E0FC60942D90967FA5C90C400FA928

Key	Value
MD5	2DEB3D129989A527ECD6F537A56B7757
PackageArch	s390
PackageDescription	Rsolid is an R package for normalizing fluorescent intensity data from ABI/SOLiD second generation sequencing platform. It has been observed that the color-calls provided by factory software contain technical artifacts, where the proportions of colors called are extremely variable across sequencing cycles. Under the random DNA fragmentation assumption, these proportions should be equal across sequencing cycles and proportional to the dinucleotide frequencies of the sample. Rsolid implements a version of the quantile normalization algorithm that transforms the intensity values before calling colors. Results show that after normalization, the total number of mappable reads increases by around 5%, and number of perfectly mapped reads increases by 10%. Moreover a 2-5% reduction in overall error rates is observed, with a 2-6% reduction in the rate of valid adjacent color mis-matches. The latter is important, since it leads to a decrease in false-positive SNP calls. The normalization algorithm is computationally efficient. In a test we are able to process 300 million reads in 2 hours using 10 computer cluster nodes. The engine functions of the package are written in C for better performance.
PackageMaintainer	Fedora Project
PackageName	R-Rsolid
PackageRelease	14.fc22
PackageVersion	0.9.31
SHA-1	6FCA5AAD9A0ED81C9A6D6CD90F07F5F37C9E5F9D
SHA-256	915E3769869AF82195B3C7410535F150560B55EB5C9B21DFD82398905F9CAFD6

Key	Value
FileSize	36974
MD5	782FD50BF7F30A2F9841239312217E66
PackageDescription	GNU R package for regression transformations This package provides the functions ace() and avas() for GNU R which can be used to select regression tranformations.
PackageMaintainer	Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
PackageName	r-cran-acepack
PackageSection	gnu-r
PackageVersion	1.3.3.3-1
SHA-1	EB7D5B54BDA5783F53A466B54DF3FA5B19A45F63
SHA-256	08D4006D687ED2E47EBD91908F2C1987001661D3B4FA8B8A2776CB881E6F145F

Key	Value
FileSize	35672
MD5	BE7671B0C7FDFCEE96747AB744C28F3A
PackageDescription	GNU R package for regression transformations This package provides the functions ace() and avas() for GNU R which can be used to select regression tranformations.
PackageMaintainer	Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
PackageName	r-cran-acepack
PackageSection	gnu-r
PackageVersion	1.3.3.3-1
SHA-1	C9C977985254E86A3D16EB6C66E6472EEA304A79
SHA-256	4896EADAB0F59B7BA67FA4073251A5F7FA141679D8B2542D9C04A1CEA66131FA

Key	Value
MD5	0E6C6EF234DEFCD727BB7B91EE2A26A7
PackageArch	s390x
PackageDescription	Rsolid is an R package for normalizing fluorescent intensity data from ABI/SOLiD second generation sequencing platform. It has been observed that the color-calls provided by factory software contain technical artifacts, where the proportions of colors called are extremely variable across sequencing cycles. Under the random DNA fragmentation assumption, these proportions should be equal across sequencing cycles and proportional to the dinucleotide frequencies of the sample. Rsolid implements a version of the quantile normalization algorithm that transforms the intensity values before calling colors. Results show that after normalization, the total number of mappable reads increases by around 5%, and number of perfectly mapped reads increases by 10%. Moreover a 2-5% reduction in overall error rates is observed, with a 2-6% reduction in the rate of valid adjacent color mis-matches. The latter is important, since it leads to a decrease in false-positive SNP calls. The normalization algorithm is computationally efficient. In a test we are able to process 300 million reads in 2 hours using 10 computer cluster nodes. The engine functions of the package are written in C for better performance.
PackageMaintainer	Fedora Project
PackageName	R-Rsolid
PackageRelease	14.fc22
PackageVersion	0.9.31
SHA-1	071A0ABEC65452F78DB94941A4E6763983BA4212
SHA-256	74A907FD50D102B29FD977AA9BE90800D90F290C71A7B2A7FFD6C1059024E914

Key	Value
FileSize	36216
MD5	E5A02D50206EB68C75AB51770AA3A737
PackageDescription	GNU R package for regression transformations This package provides the functions ace() and avas() for GNU R which can be used to select regression tranformations.
PackageMaintainer	Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
PackageName	r-cran-acepack
PackageSection	gnu-r
PackageVersion	1.3.3.3-1
SHA-1	E2DB68AD0A0D85E11B35082EFA243706B2E97A1A
SHA-256	53FACC9B3B76FB08928FCC35FDDD9285A7BEF5B3EA31FEAA5E535854276FE0C7

Key	Value
MD5	09BDC2D179424398439D2C4BFF9AD415
PackageArch	ppc64le
PackageDescription	Rsolid is an R package for normalizing fluorescent intensity data from ABI/SOLiD second generation sequencing platform. It has been observed that the color-calls provided by factory software contain technical artifacts, where the proportions of colors called are extremely variable across sequencing cycles. Under the random DNA fragmentation assumption, these proportions should be equal across sequencing cycles and proportional to the dinucleotide frequencies of the sample. Rsolid implements a version of the quantile normalization algorithm that transforms the intensity values before calling colors. Results show that after normalization, the total number of mappable reads increases by around 5%, and number of perfectly mapped reads increases by 10%. Moreover a 2-5% reduction in overall error rates is observed, with a 2-6% reduction in the rate of valid adjacent color mis-matches. The latter is important, since it leads to a decrease in false-positive SNP calls. The normalization algorithm is computationally efficient. In a test we are able to process 300 million reads in 2 hours using 10 computer cluster nodes. The engine functions of the package are written in C for better performance.
PackageMaintainer	Fedora Project
PackageName	R-Rsolid
PackageRelease	14.fc22
PackageVersion	0.9.31
SHA-1	B3F0F3343949D6724A503FCCC5DE084186C9093C
SHA-256	223F650E06B254031B7777F2EA61FF6246092ED09853985A6C820488B6240E10

Key	Value
MD5	BA1601DC6DC119FB8F7BA2820962A942
PackageArch	aarch64
PackageDescription	Rsolid is an R package for normalizing fluorescent intensity data from ABI/SOLiD second generation sequencing platform. It has been observed that the color-calls provided by factory software contain technical artifacts, where the proportions of colors called are extremely variable across sequencing cycles. Under the random DNA fragmentation assumption, these proportions should be equal across sequencing cycles and proportional to the dinucleotide frequencies of the sample. Rsolid implements a version of the quantile normalization algorithm that transforms the intensity values before calling colors. Results show that after normalization, the total number of mappable reads increases by around 5%, and number of perfectly mapped reads increases by 10%. Moreover a 2-5% reduction in overall error rates is observed, with a 2-6% reduction in the rate of valid adjacent color mis-matches. The latter is important, since it leads to a decrease in false-positive SNP calls. The normalization algorithm is computationally efficient. In a test we are able to process 300 million reads in 2 hours using 10 computer cluster nodes. The engine functions of the package are written in C for better performance.
PackageMaintainer	Fedora Project
PackageName	R-Rsolid
PackageRelease	14.fc22
PackageVersion	0.9.31
SHA-1	F218D76BEAD56B125B7F89EC98695D35DDBE2E53
SHA-256	721ED745E0999C1EA83D4F8FF14B421155D9DADE15D84AEA547DDF40087AF29F

Key	Value
MD5	77E0EF9448722FBADF5868B0E124F4E5
PackageArch	ppc64
PackageDescription	Rsolid is an R package for normalizing fluorescent intensity data from ABI/SOLiD second generation sequencing platform. It has been observed that the color-calls provided by factory software contain technical artifacts, where the proportions of colors called are extremely variable across sequencing cycles. Under the random DNA fragmentation assumption, these proportions should be equal across sequencing cycles and proportional to the dinucleotide frequencies of the sample. Rsolid implements a version of the quantile normalization algorithm that transforms the intensity values before calling colors. Results show that after normalization, the total number of mappable reads increases by around 5%, and number of perfectly mapped reads increases by 10%. Moreover a 2-5% reduction in overall error rates is observed, with a 2-6% reduction in the rate of valid adjacent color mis-matches. The latter is important, since it leads to a decrease in false-positive SNP calls. The normalization algorithm is computationally efficient. In a test we are able to process 300 million reads in 2 hours using 10 computer cluster nodes. The engine functions of the package are written in C for better performance.
PackageMaintainer	Fedora Project
PackageName	R-Rsolid
PackageRelease	14.fc22
PackageVersion	0.9.31
SHA-1	4A9A0C4128E7602DDF385A82C5D746FD82C057FA
SHA-256	9E19C8D30A6421489E50A1FC12C3228F36C5F6CBBDA4F73976BD70E2E7E58783

Key	Value
FileSize	35030
MD5	0955BFFF6EEBB4D41ED19733F1E4739D
PackageDescription	GNU R package for regression transformations This package provides the functions ace() and avas() for GNU R which can be used to select regression tranformations.
PackageMaintainer	Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
PackageName	r-cran-acepack
PackageSection	gnu-r
PackageVersion	1.3.3.3-1
SHA-1	C35BFFE96397EDFE646A37D332440EB4ADD29CDB
SHA-256	4953CD8705D8AF7C3EF376C4B9230A55B89BE19AFC0712CB6C1A616CEBB40006