Result for 4070964DA9E48A22076483339A7C41CD203E1C2F

Query result

Key	Value
MD5	8D3B1680151960E899C465997B4ACB46
PackageArch	ppc64
PackageDescription	Rsolid is an R package for normalizing fluorescent intensity data from ABI/SOLiD second generation sequencing platform. It has been observed that the color-calls provided by factory software contain technical artifacts, where the proportions of colors called are extremely variable across sequencing cycles. Under the random DNA fragmentation assumption, these proportions should be equal across sequencing cycles and proportional to the dinucleotide frequencies of the sample. Rsolid implements a version of the quantile normalization algorithm that transforms the intensity values before calling colors. Results show that after normalization, the total number of mappable reads increases by around 5%, and number of perfectly mapped reads increases by 10%. Moreover a 2-5% reduction in overall error rates is observed, with a 2-6% reduction in the rate of valid adjacent color mis-matches. The latter is important, since it leads to a decrease in false-positive SNP calls. The normalization algorithm is computationally efficient. In a test we are able to process 300 million reads in 2 hours using 10 computer cluster nodes. The engine functions of the package are written in C for better performance.
PackageMaintainer	Fedora Project
PackageName	R-Rsolid
PackageRelease	18.fc24
PackageVersion	0.9.31
SHA-1	4070964DA9E48A22076483339A7C41CD203E1C2F
SHA-256	17131E889818CDC14FE5E8F7B63CF1ACAB2EAC92E28889AC6442DBC185CD4CD9
hashlookup:children-total	22
hashlookup:trust	50

Network graph view

Children (Total: 22)

The searched file hash includes 22 children files known and seen by metalookup. A sample is included below:

Key	Value
FileName	./usr/lib64/R/library/Rsolid/INDEX
FileSize	175
MD5	D454BC562761C02412D381C9A347C69C
SHA-1	177007733670BF451339D4FB30F6C2632B2E4258
SHA-256	BC1CD3489BA8A37B576D916B24400DF8A7F231E00DB0D0981B1AA4CA93CF557D
SSDEEP	3:Yp//aLRMJgVEJw18KElKXvGQ1xWxQT3/bCFY:sMMBJ+8KrXvaQTCY
TLSH	T176C092B3E2984E22A93BA15758C88BA041B572333B4A6A8F7C1EA4401B4206036367B8

Key	Value
FileName	./usr/lib64/R/library/Rsolid/data/prop.Hs.rda
FileSize	97
MD5	2ACB03264FA6AB75C0F89FD9FCA99975
SHA-1	18F0EB0CC822D137117CBB2B77E065E1417DF61A
SHA-256	D531C4D7D7107A4953A560CE5897AF646E1A1D8EC05D462E8C6474F850140BC8
SSDEEP	3:FttsdFtD3L5WS1KKmrOrDOIJ/n:XtgLUGPVJ/n
TLSH	T1C6B01298808A3410D0CACC312010099A11D7B401461C2CCAA2200199C0982C7CB5D92C

Key	Value
FileName	./usr/lib64/R/library/Rsolid/Meta/hsearch.rds
FileSize	302
MD5	118C78AD42343C61C13F5372611A8BA8
SHA-1	1CC09B2BC9E11F5F7B34393AF92BF84E4623DBCB
SHA-256	5B931C5A06AF14FCCED05E39F43229DCF8DDFB4A8F9C623331E5F2499C0F08F2
SSDEEP	6:Xto7eLhW+y1vRojPdA/ZprujRczvuO5DtOdc7GYlUOxwlW+9w2lbjaNJd5Uwxtn:XRARyexpryRcj2c7GYlUOilJTyb3n
TLSH	T1BEE0EBE80DDE38A2DB0743B8821BC31A235C0292FF65A38B450204AC8355200AF2F3BD

Key	Value
FileName	./usr/lib/R/site-library/effects/R/effects
FileSize	1056
MD5	EBF0FC819595D631B8BF280C4B049940
RDS:package_id	182052
SHA-1	1E3082B0E541341846B7B27EAC2126CAFB0E00B9
SHA-256	2FB8B16BE23C820DAF2E51B7DDFEF61CA4978E561B1D228D546D1B356041F79E
SHA-512	A427BB0442BB076EDD389C8553F618B54605012BDA8E62409CA657C7B000404E9E45684C03C2F4444C331A994BB48C98892DECED8153DF04654982EBF900F956
SSDEEP	24:dh2pvjejSRmcyAOkHjlnAJAcEWrwYahkB1OOV0Ea:dijeuR5ysHjuecZVHC
TLSH	T13911208C6410D6FB6A0104853C4F12CDE21B6763729DA091300DD52F7B09E7562F6996
insert-timestamp	1679428382.0662453
mimetype	text/plain
source	RDS.db
tar:gname	bin
tar:uname	root

Key	Value
FileName	./usr/lib64/R/library/Rsolid/R/Rsolid.rdb
FileSize	4852
MD5	9D23E20926AF9EB3D773603FC7378060
SHA-1	23ED3AAACE49BF3918C91C60BF467DFAD3BB55D2
SHA-256	502037BC8E56CD20B32AF7258C1AD968F02072022DA6D0CC499DC94B142C35AC
SSDEEP	96:hPtoaPiKlAbtuJO8Av1jLjbPM1oqz2oV9EzqdZhnyhL5rSwA7UePE27Owsu80u+/:Bto8iKGBoAvxbMJ2owzWZ1Y5OtUeslVU
TLSH	T100A18E5F2589C103A281E904A2C937E8F71939CFA57C3DCF2496791FD27906CE66C105

Key	Value
FileName	./usr/lib64/R/library/Rsolid/Meta/data.rds
FileSize	72
MD5	65B912B23C13654D2398F3F720A45411
SHA-1	28CC876935BBA6190FD1694DE18B9EFF23EF9B2E
SHA-256	24D2C1FEF4149F79BC3AD6E307DEE42373C25B54D369C8030916E0777A7728AD
SSDEEP	3:FttVFHkpCshR8BsC0t9hnit:XtVFE50sC0t9At
TLSH	T1BCA022AF0B008800FC0002BC022F022A202B802EC0F8ECE202032B020C8230282C200C

Key	Value
FileName	./usr/lib64/R/library/Rsolid/R/Rsolid.rdx
FileSize	321
MD5	9377F631CDC35CBD650B988EFF3A6F77
SHA-1	30734B938E76510F43BBCF84C17D6642226B8EA9
SHA-256	A64F27EF10C864A6E43E2DAE4D0339D8D005C6AFA8BDD89F421FFB58D06EC36E
SSDEEP	6:XtpW6GpC8OMvOCSO2lYyH/DpC1R3hhOoqz1WOu8iP/8crBl:XVdnMvwVH7p4R3hhOBW4e/l1l
TLSH	T127E02D4DA4BE04A2EA1B852E3B309A01C634EE4907401106CC1EB8AC03B0420E033CF0

Key	Value
FileName	./usr/lib64/R/library/Rsolid/help/AnIndex
FileSize	14
MD5	27F86373197F07D636A5545AFF2255A0
SHA-1	47E504EE5B5100037DBCF1809EA13D94F84AB65E
SHA-256	53F18991FDEA62AB48EBCF22AEFE84CC4E79DED71940693E17D1D9D156BFD282
SSDEEP	3:Y8cv:le
TLSH

Key	Value
FileName	./usr/lib64/R/library/Rsolid/Meta/links.rds
FileSize	101
MD5	A31A60A4D2A304C45C1DB977A6A82102
SHA-1	6A81A4260F941602B0C60D5FAAA288520F804134
SHA-256	4AE44F9331A85EC17442F45128AD26C95215D7E5BD5551635755257831C12BC2
SSDEEP	3:FttVFHktVFlYP7qJ2xvPiJcpOIGzjpERln:XtVFEnFU7FiJcIkn
TLSH	T19AB012EC09206030CE142233524D8F3C0E478002EA2044E6E022110542B00A784C223A

Key	Value
FileName	./usr/lib64/R/library/Rsolid/libs/Rsolid.so
FileSize	68760
MD5	293D349ED70467C9E71FBD89D7B5C865
SHA-1	713862286ADFA870C15741C32557738E9ECE6BF6
SHA-256	6775D4277FC8A923E03EFCF4FBDA4BBF57370E96BC556FE35E737C3D3B726649
SSDEEP	384:q8+rpC6nZp4tsbjygi1lMEkBWuzfRnPz0tjXaWKi+RzxRdnAo2:q8+rp7ZpcsG1WEk3zZnP+KD
TLSH	T17C63C6C737808A8BD2C8337042987FBDE7993693506195077F0A06365CE2D987D6E7EA