Result for 391E542EF767F88538C5D6E5864DADA7B9DB2877

Query result

Key	Value
MD5	CD73DD6B3F1DCD0C5605C2233E652601
PackageArch	x86_64
PackageDescription	Rsolid is an R package for normalizing fluorescent intensity data from ABI/SOLiD second generation sequencing platform. It has been observed that the color-calls provided by factory software contain technical artifacts, where the proportions of colors called are extremely variable across sequencing cycles. Under the random DNA fragmentation assumption, these proportions should be equal across sequencing cycles and proportional to the dinucleotide frequencies of the sample. Rsolid implements a version of the quantile normalization algorithm that transforms the intensity values before calling colors. Results show that after normalization, the total number of mappable reads increases by around 5%, and number of perfectly mapped reads increases by 10%. Moreover a 2-5% reduction in overall error rates is observed, with a 2-6% reduction in the rate of valid adjacent color mis-matches. The latter is important, since it leads to a decrease in false-positive SNP calls. The normalization algorithm is computationally efficient. In a test we are able to process 300 million reads in 2 hours using 10 computer cluster nodes. The engine functions of the package are written in C for better performance.
PackageMaintainer	Fedora Project
PackageName	R-Rsolid
PackageRelease	33.fc33
PackageVersion	0.9.31
SHA-1	391E542EF767F88538C5D6E5864DADA7B9DB2877
SHA-256	522C32913EC5B61BB171C40651D79087DC82E826D4274351897FA4AD14EB056A
hashlookup:children-total	24
hashlookup:trust	50

Network graph view

Children (Total: 24)

The searched file hash includes 24 children files known and seen by metalookup. A sample is included below:

Key	Value
FileName	./usr/lib64/R/library/Rsolid/INDEX
FileSize	175
MD5	D454BC562761C02412D381C9A347C69C
SHA-1	177007733670BF451339D4FB30F6C2632B2E4258
SHA-256	BC1CD3489BA8A37B576D916B24400DF8A7F231E00DB0D0981B1AA4CA93CF557D
SSDEEP	3:Yp//aLRMJgVEJw18KElKXvGQ1xWxQT3/bCFY:sMMBJ+8KrXvaQTCY
TLSH	T176C092B3E2984E22A93BA15758C88BA041B572333B4A6A8F7C1EA4401B4206036367B8

Key	Value
FileName	./usr/lib64/R/library/Rsolid/data/prop.Hs.rda
FileSize	97
MD5	2ACB03264FA6AB75C0F89FD9FCA99975
SHA-1	18F0EB0CC822D137117CBB2B77E065E1417DF61A
SHA-256	D531C4D7D7107A4953A560CE5897AF646E1A1D8EC05D462E8C6474F850140BC8
SSDEEP	3:FttsdFtD3L5WS1KKmrOrDOIJ/n:XtgLUGPVJ/n
TLSH	T1C6B01298808A3410D0CACC312010099A11D7B401461C2CCAA2200199C0982C7CB5D92C

Key	Value
FileName	./usr/lib/R/site-library/effects/R/effects
FileSize	1056
MD5	EBF0FC819595D631B8BF280C4B049940
RDS:package_id	182052
SHA-1	1E3082B0E541341846B7B27EAC2126CAFB0E00B9
SHA-256	2FB8B16BE23C820DAF2E51B7DDFEF61CA4978E561B1D228D546D1B356041F79E
SHA-512	A427BB0442BB076EDD389C8553F618B54605012BDA8E62409CA657C7B000404E9E45684C03C2F4444C331A994BB48C98892DECED8153DF04654982EBF900F956
SSDEEP	24:dh2pvjejSRmcyAOkHjlnAJAcEWrwYahkB1OOV0Ea:dijeuR5ysHjuecZVHC
TLSH	T13911208C6410D6FB6A0104853C4F12CDE21B6763729DA091300DD52F7B09E7562F6996
insert-timestamp	1679428382.0662453
mimetype	text/plain
source	RDS.db
tar:gname	bin
tar:uname	root

Key	Value
FileName	./usr/lib64/R/library/Rsolid/Meta/data.rds
FileSize	93
MD5	1AE6ADF440221E3F2F91F58969B6080C
SHA-1	39850309433FF917F24CE4FF7176DC78AF944421
SHA-256	53A70A3DD874D5A1A4464981425F63BAFDCDC87AFA6058289240F08649767A7D
SSDEEP	3:FttVFDkDPJWOjf9hdE5lYuq5nzDFYDvbiaB5/n:XtVF4r8OJh25DwDaSWn
TLSH	T1A3B0129653C1B2B1EC05443057300280C5854651CDB069921159011DB4C841175B38EF

Key	Value
FileName	./usr/lib64/R/library/Rsolid/help/Rsolid.rdx
FileSize	167
MD5	04B2D41EE07121087B376A385695912B
SHA-1	42FE33C89C54674CAAD7D667D3241584F935CF41
SHA-256	84B3F2C5FB6F8F11BE34335B42C7E9D268D60C49143D04CB4A3F48F12AF8948D
SSDEEP	3:FttVFDkDPJWOjf9hSjnUg3Krm8jJkp3HfDrdAzqXmtku3HmWmjhIJ2kre7u:XtVF4r8OJhOUgai8jJgVSn3mjuJ2kqy
TLSH	T196C08C480A98AA92C11E69289604DA834489CBE9EEB08A941622006DA8E80513EB21CE

Key	Value
FileName	./usr/lib64/R/library/Rsolid/help/AnIndex
FileSize	14
MD5	27F86373197F07D636A5545AFF2255A0
SHA-1	47E504EE5B5100037DBCF1809EA13D94F84AB65E
SHA-256	53F18991FDEA62AB48EBCF22AEFE84CC4E79DED71940693E17D1D9D156BFD282
SSDEEP	3:Y8cv:le
TLSH

Key	Value
FileName	./usr/lib64/R/library/Rsolid/Meta/hsearch.rds
FileSize	323
MD5	C68995D413145B671CAFB58BD2E82EE8
SHA-1	6316C06F5A24E5E575D0974714B5D9F7B2B78A08
SHA-256	CDADF5BE6326B5E7EA26E8937D9550DDFD940185C008C1503AD987C5B36F8D0A
SSDEEP	6:XtqdvgNy4dDXliYSakjDx+/FhXNoBWmnWEmjDAUIb76Fn8Tw2h2W:XR9pXliYSak3x+/HXN9mnWbAU62Fn8Tj
TLSH	T1F6E02D61D7430A40F1906072138BF1E6CC0620F704F67E838FF188DBD320442BA2808D

Key	Value
FileName	./usr/lib64/R/library/Rsolid/R/Rsolid.rdb
FileSize	15250
MD5	8ABC9ADF8AE81FACE4BBA5778844742B
SHA-1	661DDCE3F467E6316E7D690AAE4A00D3871EDB47
SHA-256	2BB2C87CF00F17B467736B3C3EEC3D544B2274B98A0139885EB5CE5C5F5DC69C
SSDEEP	384:tgBAGC0kxelE9DJs1MklpeNX0N4zLZB7h8U:O+Gwe6tNkNqFth8U
TLSH	T1A062CF6863DD59B212600253227E87D362041DE3ACA2F7243677D2BCF844502DCBA7AB

Key	Value
FileName	./usr/lib/.build-id/98/ef8336e02e2c07b91b22320b00c2560a5864bd
FileSize	53
MD5	3106C543D20A5C2B8AF97441B57B6CAD
SHA-1	725D0C96DF1AFECD00C49C7B066CFEADD7E3653E
SHA-256	BE1E44CBA68BC18D7C4F96563EB1EA0B383FF1B7FB5D55AF24AA38CE75F9B601
SSDEEP	3:gCD/KK+WJMYGN3on:X/R1CYGlo
TLSH	T1AB9002318E3D222073F368480C300C0C2FC13C043209AE1C048D057E430B54401015C0

Key	Value
FileName	./usr/lib64/R/library/Rsolid/html/00Index.html
FileSize	1262
MD5	9DF78D152F6C5193546A1B4A93494F6B
SHA-1	799BFFCE246E3109D3FCB4A363434CCF2C68E13D
SHA-256	DD1F06618FE245EF0572C7270373D7C51564BE858F1337F80B8B355071CD10F2
SSDEEP	24:hM0mIhBIXF0SspmIXF0PP7jMvvfTMRyF42P1YZp5dPyNtiXF2g:lmIzIepmI4lK4RVPIti8g
TLSH	T14221B426E0E52B23746388A145C02FA413921363370B5D8F5E2E78B3C7047E533323D5