Result for 2C89EBC2F978BD797D6125B6FCDD950009D68501

Search result
Graph view
Children (22)

Query result

Key Value
MD528246D1E5217185AD82EC8E90DD1A85A
PackageArchaarch64
PackageDescription Rsolid is an R package for normalizing fluorescent intensity data from ABI/SOLiD second generation sequencing platform. It has been observed that the color-calls provided by factory software contain technical artifacts, where the proportions of colors called are extremely variable across sequencing cycles. Under the random DNA fragmentation assumption, these proportions should be equal across sequencing cycles and proportional to the dinucleotide frequencies of the sample. Rsolid implements a version of the quantile normalization algorithm that transforms the intensity values before calling colors. Results show that after normalization, the total number of mappable reads increases by around 5%, and number of perfectly mapped reads increases by 10%. Moreover a 2-5% reduction in overall error rates is observed, with a 2-6% reduction in the rate of valid adjacent color mis-matches. The latter is important, since it leads to a decrease in false-positive SNP calls. The normalization algorithm is computationally efficient. In a test we are able to process 300 million reads in 2 hours using 10 computer cluster nodes. The engine functions of the package are written in C for better performance.
PackageMaintainerFedora Project
PackageNameR-Rsolid
PackageRelease18.fc24
PackageVersion0.9.31
SHA-12C89EBC2F978BD797D6125B6FCDD950009D68501
SHA-25685ECC7ACDAD09BC431262D66615350F1C0BA127650A944674337A1C050852636
hashlookup:children-total22
hashlookup:trust50

Network graph view

Children (Total: 22)

The searched file hash includes 22 children files known and seen by metalookup. A sample is included below:

Key Value
FileName./usr/lib64/R/library/Rsolid/INDEX
FileSize175
MD5D454BC562761C02412D381C9A347C69C
SHA-1177007733670BF451339D4FB30F6C2632B2E4258
SHA-256BC1CD3489BA8A37B576D916B24400DF8A7F231E00DB0D0981B1AA4CA93CF557D
SSDEEP3:Yp//aLRMJgVEJw18KElKXvGQ1xWxQT3/bCFY:sMMBJ+8KrXvaQTCY
TLSHT176C092B3E2984E22A93BA15758C88BA041B572333B4A6A8F7C1EA4401B4206036367B8
Key Value
FileName./usr/lib64/R/library/Rsolid/data/prop.Hs.rda
FileSize97
MD52ACB03264FA6AB75C0F89FD9FCA99975
SHA-118F0EB0CC822D137117CBB2B77E065E1417DF61A
SHA-256D531C4D7D7107A4953A560CE5897AF646E1A1D8EC05D462E8C6474F850140BC8
SSDEEP3:FttsdFtD3L5WS1KKmrOrDOIJ/n:XtgLUGPVJ/n
TLSHT1C6B01298808A3410D0CACC312010099A11D7B401461C2CCAA2200199C0982C7CB5D92C
Key Value
FileName./usr/lib64/R/library/Rsolid/Meta/hsearch.rds
FileSize302
MD5118C78AD42343C61C13F5372611A8BA8
SHA-11CC09B2BC9E11F5F7B34393AF92BF84E4623DBCB
SHA-2565B931C5A06AF14FCCED05E39F43229DCF8DDFB4A8F9C623331E5F2499C0F08F2
SSDEEP6:Xto7eLhW+y1vRojPdA/ZprujRczvuO5DtOdc7GYlUOxwlW+9w2lbjaNJd5Uwxtn:XRARyexpryRcj2c7GYlUOilJTyb3n
TLSHT1BEE0EBE80DDE38A2DB0743B8821BC31A235C0292FF65A38B450204AC8355200AF2F3BD
Key Value
FileName./usr/lib/R/site-library/effects/R/effects
FileSize1056
MD5EBF0FC819595D631B8BF280C4B049940
RDS:package_id182052
SHA-11E3082B0E541341846B7B27EAC2126CAFB0E00B9
SHA-2562FB8B16BE23C820DAF2E51B7DDFEF61CA4978E561B1D228D546D1B356041F79E
SHA-512A427BB0442BB076EDD389C8553F618B54605012BDA8E62409CA657C7B000404E9E45684C03C2F4444C331A994BB48C98892DECED8153DF04654982EBF900F956
SSDEEP24:dh2pvjejSRmcyAOkHjlnAJAcEWrwYahkB1OOV0Ea:dijeuR5ysHjuecZVHC
TLSHT13911208C6410D6FB6A0104853C4F12CDE21B6763729DA091300DD52F7B09E7562F6996
insert-timestamp1679428382.0662453
mimetypetext/plain
sourceRDS.db
tar:gnamebin
tar:unameroot
Key Value
FileName./usr/lib64/R/library/Rsolid/Meta/data.rds
FileSize72
MD565B912B23C13654D2398F3F720A45411
SHA-128CC876935BBA6190FD1694DE18B9EFF23EF9B2E
SHA-25624D2C1FEF4149F79BC3AD6E307DEE42373C25B54D369C8030916E0777A7728AD
SSDEEP3:FttVFHkpCshR8BsC0t9hnit:XtVFE50sC0t9At
TLSHT1BCA022AF0B008800FC0002BC022F022A202B802EC0F8ECE202032B020C8230282C200C
Key Value
FileName./usr/lib64/R/library/Rsolid/R/Rsolid.rdb
FileSize4854
MD59CC0B9785F4D74FE2B6FF9D4BDF9678F
SHA-141D10FF783BB93338D7F2C1C1FBBF9BC04CAC810
SHA-2566968859B27A7A78EE1BDD2537536987CDECE52BC396D9BA4130AB96EDA82F708
SSDEEP96:hPt7SJPiKlAbtuJO8Av1jLjbPM1oqz2oV9EzqdZhnyhL5rSwA7UePE27Owsu80uU:BtmpiKGBoAvxbMJ2owzWZ1Y5OtUeslVU
TLSHT124A18EDF26889013A2E1A904E2C877E9F71636CF697D39CF206B641EC1A903CE5AC105
Key Value
FileName./usr/lib64/R/library/Rsolid/DESCRIPTION
FileSize653
MD57E4AFB39BC5941AD89B382408ECF470E
SHA-14256483455DBE8B8D432463C4D9322B0A50373C7
SHA-256CB0A2034E2CE1D439D2CB4B4E1A414C8F7FA56203EC67CF3EF957251097F5BD0
SSDEEP12:06+QWtHbrXFFMB2X+5XaLzcSDx1JvLyLns2799Zv5PX7JFeMfjpViFbJD5vdBR:ontPXFF7u5WDx1JvmLnnDZv5lFe6pAFN
TLSHT1E0F0FE02DB6AE3A0E907428E0CF8CF694A345153778A9568FA8E4C108A4134121631F8
Key Value
FileName./usr/lib64/R/library/Rsolid/help/AnIndex
FileSize14
MD527F86373197F07D636A5545AFF2255A0
SHA-147E504EE5B5100037DBCF1809EA13D94F84AB65E
SHA-25653F18991FDEA62AB48EBCF22AEFE84CC4E79DED71940693E17D1D9D156BFD282
SSDEEP3:Y8cv:le
TLSH
Key Value
FileName./usr/lib64/R/library/Rsolid/Meta/package.rds
FileSize699
MD5922D47E061A85F7C8CEBF9B96724DC04
SHA-1570EDC6CE56D6EB88950879D7350BB697943B3D8
SHA-256D6916BC20AC7C4F8A0F176BA3C5B9EE8C2A668534940539694941B2B77B5EE9B
SSDEEP12:XMIAnUrkwP7K/H3dkeroTMDEzM1oJkD4VH0NwANdFWyadsFHu5AfQNVPKll:XM+PW/H3PMzM1oJRRqLXo/d3lzPa
TLSHT10F0144003601486BD1510DF3CDFFCD101FDB8D178F28B1397F94860184BA0A12A1E5AD
Key Value
FileName./usr/lib64/R/library/Rsolid/Meta/links.rds
FileSize101
MD5A31A60A4D2A304C45C1DB977A6A82102
SHA-16A81A4260F941602B0C60D5FAAA288520F804134
SHA-2564AE44F9331A85EC17442F45128AD26C95215D7E5BD5551635755257831C12BC2
SSDEEP3:FttVFHktVFlYP7qJ2xvPiJcpOIGzjpERln:XtVFEnFU7FiJcIkn
TLSHT19AB012EC09206030CE142233524D8F3C0E478002EA2044E6E022110542B00A784C223A





metalookup is a service from miwakeru.com