Result for F4D63E9B6422FAC0B7C8EB264790AE15445C8CDE

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Children (22)

Query result

Key Value
MD5A765912F72825921DD1C3393A8B3BEF7
PackageArchs390
PackageDescription Rsolid is an R package for normalizing fluorescent intensity data from ABI/SOLiD second generation sequencing platform. It has been observed that the color-calls provided by factory software contain technical artifacts, where the proportions of colors called are extremely variable across sequencing cycles. Under the random DNA fragmentation assumption, these proportions should be equal across sequencing cycles and proportional to the dinucleotide frequencies of the sample. Rsolid implements a version of the quantile normalization algorithm that transforms the intensity values before calling colors. Results show that after normalization, the total number of mappable reads increases by around 5%, and number of perfectly mapped reads increases by 10%. Moreover a 2-5% reduction in overall error rates is observed, with a 2-6% reduction in the rate of valid adjacent color mis-matches. The latter is important, since it leads to a decrease in false-positive SNP calls. The normalization algorithm is computationally efficient. In a test we are able to process 300 million reads in 2 hours using 10 computer cluster nodes. The engine functions of the package are written in C for better performance.
PackageMaintainerFedora Project
PackageNameR-Rsolid
PackageRelease11.fc20
PackageVersion0.9.31
SHA-1F4D63E9B6422FAC0B7C8EB264790AE15445C8CDE
SHA-25673FDD886549894676616C4C2CEBD8871BA1490357B9D5091EB9743E66DF91AF3
hashlookup:children-total22
hashlookup:trust50

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Children (Total: 22)

The searched file hash includes 22 children files known and seen by metalookup. A sample is included below:

Key Value
FileName./usr/lib/R/library/Rsolid/R/Rsolid.rdx
FileSize321
MD5F919ADCB3F19EF6E814A52D00B374102
SHA-102E00851B52ED5FC638251AC3D327289A4A05A9E
SHA-2560C1068A40A818B822483E1DC5433241E534D83FE75F20DCE9BD5FF501468A395
SSDEEP6:XtSIRYqclRSsXhCR73+QN+Tpn5o2/1ctK7fbgkFOP94alhLd1Kj/iST:Xw4YnLBAp3En22tcK7fTOPBlhLo7
TLSHT13BE02DE0624821F0C865C03F32969B0838084240075C0382633A00F0CB7CA9E3B22086
Key Value
FileName./usr/lib64/R/library/Rsolid/help/paths.rds
FileSize79
MD58B7992D10351F43E5EA3581F5F6D51C8
SHA-10BABD1E880394F99C4858CAB309617476FA5D51F
SHA-256411492B7ED07CC02F336AD4CC05BCCB45F44870A6A7888D91BA050361D2DD731
SSDEEP3:FttVFHl9jXwi/MD3F1Ocdmuv/:XtVF0WMDvzwuH
TLSHT118A0222ABA8C803EC0B2B238C3CC00820880C088EB33E88E38C003300080F83E8C0A3C
Key Value
FileName./usr/lib64/R/library/Rsolid/INDEX
FileSize175
MD5D454BC562761C02412D381C9A347C69C
SHA-1177007733670BF451339D4FB30F6C2632B2E4258
SHA-256BC1CD3489BA8A37B576D916B24400DF8A7F231E00DB0D0981B1AA4CA93CF557D
SSDEEP3:Yp//aLRMJgVEJw18KElKXvGQ1xWxQT3/bCFY:sMMBJ+8KrXvaQTCY
TLSHT176C092B3E2984E22A93BA15758C88BA041B572333B4A6A8F7C1EA4401B4206036367B8
Key Value
FileName./usr/lib64/R/library/Rsolid/data/prop.Hs.rda
FileSize97
MD52ACB03264FA6AB75C0F89FD9FCA99975
SHA-118F0EB0CC822D137117CBB2B77E065E1417DF61A
SHA-256D531C4D7D7107A4953A560CE5897AF646E1A1D8EC05D462E8C6474F850140BC8
SSDEEP3:FttsdFtD3L5WS1KKmrOrDOIJ/n:XtgLUGPVJ/n
TLSHT1C6B01298808A3410D0CACC312010099A11D7B401461C2CCAA2200199C0982C7CB5D92C
Key Value
FileName./usr/lib64/R/library/Rsolid/help/aliases.rds
FileSize69
MD5D550CEFD41F39A1B34C8B93B7A58AB73
SHA-11A599DE38F3EE1E68EAF0F0233494820C4CE9002
SHA-2567079727B0D9932DF82AC4C61CA3A36C591052E3C8BB3694DB584403056141430
SSDEEP3:FttVFHl9jUkGv1DFsAoeXlAI6g0l:XtVFwkG1Hizl
TLSHT1E7A00269539D8428D456E873224E4D15E45D458643409DA3E71112082584ED1DD8613F
Key Value
CRC32375C6D7B
FileName./usr/lib/R/site-library/Zelig/html/R.css
FileSize1179
MD5444535B9CB76DDFF1BAB1E1865A3FB14
OpSystemCode362
ProductCode13543
RDS:package_id182052
SHA-11C99E2730C58AC3191F063F2F79C505D2E890397
SHA-256E0A68E98CA3B506E8181A17634C18CAF903F4CDF983105B36E2D7DFF7E2E30D8
SSDEEP24:5zUURQcpMs91Ep9swJ1Epk61Ep0p4G1EU1Ep0V42Xm4wi54u:5gdkqtCpiXCVQ9u
SpecialCode
TLSHT1E821D6529B6D000AB77F49413A279739429494BDDD6A5F3C30ADB8A4FF81470739AB42
dbnsrl_modern_rds
insert-timestamp1679424460.1894357
sourceRDS.db
tar:gnamewheel
tar:unameroot
Key Value
FileName./usr/lib/R/library/Rsolid/R/Rsolid.rdb
FileSize4856
MD53083190E0649E519D38D88C4E3ECF7C8
SHA-11DC09B32644AB7FC7FC762AE3DFF1643E9EFD714
SHA-25685C57CC3E37937ED1CF1DAA4597134650E8ECE5E8B905E1BF4C377D59F7DD1FC
SSDEEP96:wl3bpWRPKvQuJO8Av1jLYrqbdDYg1tClwiviVlYLNstt8M:wl9OPK7AvxgINY4tniaT4gL
TLSHT142A16DB6909C861134C8C81CD79DAAECE6813344276C62529D737B6A7642FC176D60BE
Key Value
FileName./usr/lib/R/site-library/effects/R/effects
FileSize1056
MD5EBF0FC819595D631B8BF280C4B049940
RDS:package_id182052
SHA-11E3082B0E541341846B7B27EAC2126CAFB0E00B9
SHA-2562FB8B16BE23C820DAF2E51B7DDFEF61CA4978E561B1D228D546D1B356041F79E
SHA-512A427BB0442BB076EDD389C8553F618B54605012BDA8E62409CA657C7B000404E9E45684C03C2F4444C331A994BB48C98892DECED8153DF04654982EBF900F956
SSDEEP24:dh2pvjejSRmcyAOkHjlnAJAcEWrwYahkB1OOV0Ea:dijeuR5ysHjuecZVHC
TLSHT13911208C6410D6FB6A0104853C4F12CDE21B6763729DA091300DD52F7B09E7562F6996
insert-timestamp1679428382.0662453
mimetypetext/plain
sourceRDS.db
tar:gnamebin
tar:unameroot
Key Value
FileName./usr/lib64/R/library/Rsolid/Meta/hsearch.rds
FileSize298
MD51971283A1604DA28DDC2215C3DA6CEEC
SHA-1302B6B0869E43207BA4C7AB55248F06ADC69944B
SHA-256337B70F276AE53A9FA391BC58C1AA010B5204602ABC41BBC3ECF9604162DF11D
SSDEEP6:Xt6bksUdSx9f8ndGxRrh+Ek/rk1T21vR4+y4Jsd9qq04K2G9bjb+ateW:X0bydSfEnqkEk/rKYRjrJU9Z04vGtnzh
TLSHT129E0EB66894973FE98544970EF6CB132310A3C29C1D4C2B93979D838EAB758154DCCAC
Key Value
FileName./usr/lib64/R/library/Rsolid/Meta/Rd.rds
FileSize284
MD5083C3D2539A6EDA8AA8CAFC5E13646CB
SHA-13200A8EDD4D65856817D27D6AECE23361563D069
SHA-25652EF946D1B3DC165440336384BCE760FB259B551E30657034F9B4D058EB6EF4F
SSDEEP6:Xt1u3nPaPJEd5Tq7DywDvg6kUW8M7x90MNX0o3XI:X/InP0gNq7ewMPUjIfNXlI
TLSHT1C1D0EB88BEDA8372FA1311B228D2F409C31ACF2428381A22EC04C306188F1C8BB48684





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