Key | Value |
---|---|
FileSize | 2538884 |
MD5 | 6755E2492DA132D7EBFB8542DF7CCE72 |
PackageDescription | Immunoglobulin Clonal Lineage and Diversity Analysis Alakazam is part of the Immcantation analysis framework for Adaptive Immune Receptor Repertoire sequencing (AIRR-seq) and provides a set of tools to investigate lymphocyte receptor clonal lineages, diversity, gene usage, and other repertoire level properties, with a focus on high-throughput immunoglobulin (Ig) sequencing. . Alakazam serves five main purposes: * Providing core functionality for other R packages in the Immcantation framework. This includes common tasks such as file I/O, basic DNA sequence manipulation, and interacting with V(D)J segment and gene annotations. * Providing an R interface for interacting with the output of the pRESTO and Change-O tool suites. * Performing lineage reconstruction on clonal populations of Ig sequences and analyzing the topology of the resultant lineage trees. * Performing clonal abundance and diversity analysis on lymphocyte repertoires. * Performing physicochemical property analyses of lymphocyte receptor sequences. |
PackageMaintainer | Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net> |
PackageName | r-cran-alakazam |
PackageSection | gnu-r |
PackageVersion | 1.1.0-1 |
SHA-1 | F26E1F545038B01259C2167CEBE75D4305999FB4 |
SHA-256 | 9C3F8DD2577496F611553EFA604AA5956A74D4F370058E83AA6BA2220AB8E0E9 |
hashlookup:children-total | 57 |
hashlookup:trust | 50 |
The searched file hash includes 57 children files known and seen by metalookup. A sample is included below:
Key | Value |
---|---|
FileName | usr/share/R/R/nspackloader.R |
FileSize | 1058 |
MD5 | D6C68F1FE41CED6E98A766A3757313DA |
RDS:package_id | 293685 |
SHA-1 | 12C0D3D6E3F5B5D749C93FECA122CBA34B466AB5 |
SHA-256 | 570CA456B280CDEB201EF5EBDF22DC8F80092E2C0C68E33C7F73340E420F3759 |
SHA-512 | 6824A8335BC36AF7808471FE603E2C4FC7B77BD08D61DF060B80444424563B0764DE87AAD8D6D20E926D02AA20E22528FFA8ED517AF5F35A01ACFA8BD2A90590 |
SSDEEP | 24:do2pvjejSRmcyAOkHjlnAgAcEWrwYahkB1OOV0Ea:d1jeuR5ysHju3cZVHC |
TLSH | T1FB1142886410D7FB6A0104853C4F22CDE31F6723729DA091300DD12F7B0DE7552F69D6 |
insert-timestamp | 1728198681.437601 |
mimetype | text/plain |
source | snap:VCjprGsSZiPuV3CmQViE4TvPMKTOlaiL_119 |
tar:gname | root |
tar:uname | root |
Key | Value |
---|---|
FileName | ./usr/lib/R/site-library/alakazam/doc/Fastq-Vignette.pdf |
FileSize | 171966 |
MD5 | A5D9849DAAE3AAB81984FA270AD8ED92 |
SHA-1 | 1A09080D37C5C552ADFF5E62A43AA35FFE6A3DC8 |
SHA-256 | 69FBC207DD2A2BF7D6B3F8DBC216F96B7E3DC0D6D06BEFC2FEE8369B1E10B9DB |
SSDEEP | 3072:rqCJk4jW3CVWJWxtFLob3/o9+4IG9+bH38S8eozzl2RZ3RDz2IQiyEy:rqCS4jPVWwHFLEAk7Lovsv3RDz2IK |
TLSH | T152F322950A6A7C0D832E75A2B96730748BED75231B0B447DF452AB438F2DD874BC8BC8 |
Key | Value |
---|---|
FileName | ./usr/lib/R/site-library/alakazam/Meta/links.rds |
FileSize | 1428 |
MD5 | D46449BC7834931C6746B3672E3373BB |
SHA-1 | 2341F2F8F93CBB64993B0093DB7ACA1B872C53A5 |
SHA-256 | 83C90A2B36EEE5AF7548F99E81224996BF80A949611DDECDDB45EB28C1C43D5A |
SSDEEP | 24:X+IPdZOd4qgdCjwJmn0CCm5N6W/xaDwz4sztO4LKuIjH:XRm0yP6W/xmQ4WtOe9C |
TLSH | T1F1213BE0156B90F5F7B9C537C1E0C725287628881BBCF2E834828A62EAE4004EB5913E |
Key | Value |
---|---|
FileName | ./usr/lib/R/site-library/alakazam/doc/Lineage-Vignette.pdf |
FileSize | 221913 |
MD5 | 902255714674F47CEE4E6C9939998CCE |
SHA-1 | 23DF2D7AEF515F7E22C3C6276469F6C6B139D01E |
SHA-256 | 6750E59D614E35DB96B26B2547187E6E290C9C2A052A3A6939E9CCE8817565F2 |
SSDEEP | 6144:I8fSdJnZKm9Q3yruLUCEITFVfuz7aHJwl7LJ0pMT3:I8fSdJZKmmCqhEgnWXi8x0+T3 |
TLSH | T1202412E7F765944CD453DC22F98B720B98C750951E3B4878B8F88E903A4EE8451EA7CE |
Key | Value |
---|---|
FileName | ./usr/lib/R/site-library/alakazam/Meta/Rd.rds |
FileSize | 3276 |
MD5 | A5158BA69D1756F1EA73F5313C6EFCEA |
SHA-1 | 24F82B782734256859F74B5585AF67CE20B3084E |
SHA-256 | 7CF8EB286649713A097EED8CDC036A63F450AEEFAA0939A5D237007A17A3C44E |
SSDEEP | 48:X/CJwAVT8MH5sRtk+vrNUh/293DyeoJlvzdtJ86zvu3Z3+eQD0vir20y5gTKOrBO:v8NlH5C1Uh/43mvlja0mp3VQDCFjYu |
TLSH | T148616D505016883EFB44A2287D7E598AA5F61AF6F9BC70783C2C11FD5F084914EE04E4 |
Key | Value |
---|---|
FileName | ./usr/lib/R/site-library/alakazam/help/alakazam.rdb |
FileSize | 216268 |
MD5 | 06A79AA28EA493B2E05BE7F0F7D3DE88 |
SHA-1 | 28C9A8A22E4056C67F1A2FE00FBD38EA17B044FD |
SHA-256 | 787DA79E288D19D4A11FA0FB2B419E4712E4E8A1F420ECCB149BDFC0C7E1C8E0 |
SSDEEP | 3072:WzbhLvZuls4DEpTMalIB7s8McYOugDGr+M+nF1frmFr7VaFrRroZIcGKT433dP6d:WnxRGaTHl2Q8FY/zrojmFUxoq9NvLeh |
TLSH | T1562412D1A5084154C63CA05FA4B39A8DFEEB2806B563B6FC29D9CF347CC7988D7D8225 |
Key | Value |
---|---|
FileName | ./usr/share/doc/r-cran-alakazam/copyright |
FileSize | 35802 |
MD5 | 621BCD5CD06806BD208EAA379C83E466 |
SHA-1 | 293FD9DBCC780114833E66B387012A85F98067FD |
SHA-256 | 98B8C357677FEE122B3564EC2CE9F32F199339D4D3853B061713FFEDDA120DF8 |
SSDEEP | 768:/EwGBfvjkbfWHMTSFx8CFviR9cRanTrNs:/EfAuBDFqcX |
TLSH | T1F9F2635FB74413B2028202916A8B68DEE31AD03973764495B85DC15C27B7E3583BFBED |
Key | Value |
---|---|
FileName | ./usr/lib/R/site-library/alakazam/extdata/example_airr.tsv.gz |
FileSize | 192178 |
MD5 | B8013C3C77BA0B0D826A0D2C0625903C |
SHA-1 | 2BC42155DE46200D58453DB49E37B888A97E59C9 |
SHA-256 | F4E9E2E773094707DA88F9188C8E8CCCA96082C6F33DF7EB451BA3A674ACCEFE |
SSDEEP | 3072:IrbXVGfCAcVvHioIz4ivGwla1Hr7aCuWMYbCMB5pUVGl+FBV4p6euN7pCmhEbIDX:IrbXYfkIzjvGmalucCupUo+FGWBpHEI7 |
TLSH | T1891422986444E0BA8F395F8F09F7331892DA05A08292FFD7E896B36B972411433D1E3D |
Key | Value |
---|---|
FileName | ./usr/lib/R/site-library/alakazam/data/Rdata.rdb |
FileSize | 384323 |
MD5 | EE99406777164CCE8CF8B5ECE2E54BC1 |
SHA-1 | 2E56CD47450B954AD0DF384404945C450B8963CF |
SHA-256 | 7B55532F0F821E79D719CBE34A4A52387DF6A3571163DBF6847AD11250448B92 |
SSDEEP | 6144:fM5Xqw1jhvwOeXmk14C2cG10LKzUpenACf5YOLL8UlT4VwRdaWQgMUIPPsK:fMxqwxIXmkyC00LVkndf5pL3lkVwiWQn |
TLSH | T163841296F902C5073456AF3AA5E2D9288F7DE17391201FAE02E5C25FF18D67CA5C7C0A |
Key | Value |
---|---|
FileName | ./usr/lib/R/site-library/alakazam/doc/Files-Vignette.R |
FileSize | 732 |
MD5 | 9D129FBE25A9F2BE19B083E23549D621 |
SHA-1 | 31BF0D208AC1E161008091524C0F12E40380ABB5 |
SHA-256 | 59D44C0394ACEFAA10319C313D2E420B8F74EDA6ADF8E6DB43B27194406BB5F7 |
SSDEEP | 12:jEzkdsI2R+mvQPjVQT4Jb7I1B6WspvBvtrCBQwiB7TQLxv:jEwdA+F7yT2bUB6WsUBaB7ixv |
TLSH | T14E019E226FCA0E1F09F3D5F07289B185E4EEB4F0F6740A512A88C595284C935B54E96F |