Result for D5733EF1BC2B1CC6D454C93E57E0A00CBC24D09F

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Children (22)

Query result

Key Value
MD519A0A6BE31C9461B50446F1BF6C1B058
PackageArchs390x
PackageDescription Rsolid is an R package for normalizing fluorescent intensity data from ABI/SOLiD second generation sequencing platform. It has been observed that the color-calls provided by factory software contain technical artifacts, where the proportions of colors called are extremely variable across sequencing cycles. Under the random DNA fragmentation assumption, these proportions should be equal across sequencing cycles and proportional to the dinucleotide frequencies of the sample. Rsolid implements a version of the quantile normalization algorithm that transforms the intensity values before calling colors. Results show that after normalization, the total number of mappable reads increases by around 5%, and number of perfectly mapped reads increases by 10%. Moreover a 2-5% reduction in overall error rates is observed, with a 2-6% reduction in the rate of valid adjacent color mis-matches. The latter is important, since it leads to a decrease in false-positive SNP calls. The normalization algorithm is computationally efficient. In a test we are able to process 300 million reads in 2 hours using 10 computer cluster nodes. The engine functions of the package are written in C for better performance.
PackageMaintainerFedora Project
PackageNameR-Rsolid
PackageRelease9.fc19
PackageVersion0.9.31
SHA-1D5733EF1BC2B1CC6D454C93E57E0A00CBC24D09F
SHA-256516592025DB5F60060AE754CB924E15F9D4140DB5047838C5686DBA9EF0766BA
hashlookup:children-total22
hashlookup:trust50

Network graph view

Children (Total: 22)

The searched file hash includes 22 children files known and seen by metalookup. A sample is included below:

Key Value
FileName./usr/lib64/R/library/Rsolid/INDEX
FileSize175
MD5D454BC562761C02412D381C9A347C69C
SHA-1177007733670BF451339D4FB30F6C2632B2E4258
SHA-256BC1CD3489BA8A37B576D916B24400DF8A7F231E00DB0D0981B1AA4CA93CF557D
SSDEEP3:Yp//aLRMJgVEJw18KElKXvGQ1xWxQT3/bCFY:sMMBJ+8KrXvaQTCY
TLSHT176C092B3E2984E22A93BA15758C88BA041B572333B4A6A8F7C1EA4401B4206036367B8
Key Value
FileName./usr/lib64/R/library/Rsolid/data/prop.Hs.rda
FileSize97
MD52ACB03264FA6AB75C0F89FD9FCA99975
SHA-118F0EB0CC822D137117CBB2B77E065E1417DF61A
SHA-256D531C4D7D7107A4953A560CE5897AF646E1A1D8EC05D462E8C6474F850140BC8
SSDEEP3:FttsdFtD3L5WS1KKmrOrDOIJ/n:XtgLUGPVJ/n
TLSHT1C6B01298808A3410D0CACC312010099A11D7B401461C2CCAA2200199C0982C7CB5D92C
Key Value
CRC32375C6D7B
FileName./usr/lib/R/site-library/Zelig/html/R.css
FileSize1179
MD5444535B9CB76DDFF1BAB1E1865A3FB14
OpSystemCode362
ProductCode13543
RDS:package_id182052
SHA-11C99E2730C58AC3191F063F2F79C505D2E890397
SHA-256E0A68E98CA3B506E8181A17634C18CAF903F4CDF983105B36E2D7DFF7E2E30D8
SSDEEP24:5zUURQcpMs91Ep9swJ1Epk61Ep0p4G1EU1Ep0V42Xm4wi54u:5gdkqtCpiXCVQ9u
SpecialCode
TLSHT1E821D6529B6D000AB77F49413A279739429494BDDD6A5F3C30ADB8A4FF81470739AB42
dbnsrl_modern_rds
insert-timestamp1679424460.1894357
sourceRDS.db
tar:gnamewheel
tar:unameroot
Key Value
FileName./usr/lib64/R/library/Rsolid/DESCRIPTION
FileSize648
MD523543248C4C7C416607AA69AA916EFD4
SHA-11DB39648C2C1847AA268BBD0B6F943CD32C81DAC
SHA-2567264479860ED1652C56D73DDBCBD9B18AEC123C4C67CE86A45FDECE33EEFFB3A
SSDEEP12:06+QWtHbrXFFMB2X+5XaLzcSDx1JvLyLns2799Zv5PX7JFeMfjpViFbJDvMu:ontPXFF7u5WDx1JvmLnnDZv5lFe6pAFP
TLSHT1EBF02301DB6BF7B1E90B838F08F5CFA84A345153B7995458FE9E4C108A013012253AFC
Key Value
FileName./usr/lib/R/site-library/effects/R/effects
FileSize1056
MD5EBF0FC819595D631B8BF280C4B049940
RDS:package_id182052
SHA-11E3082B0E541341846B7B27EAC2126CAFB0E00B9
SHA-2562FB8B16BE23C820DAF2E51B7DDFEF61CA4978E561B1D228D546D1B356041F79E
SHA-512A427BB0442BB076EDD389C8553F618B54605012BDA8E62409CA657C7B000404E9E45684C03C2F4444C331A994BB48C98892DECED8153DF04654982EBF900F956
SSDEEP24:dh2pvjejSRmcyAOkHjlnAJAcEWrwYahkB1OOV0Ea:dijeuR5ysHjuecZVHC
TLSHT13911208C6410D6FB6A0104853C4F12CDE21B6763729DA091300DD52F7B09E7562F6996
insert-timestamp1679428382.0662453
mimetypetext/plain
sourceRDS.db
tar:gnamebin
tar:unameroot
Key Value
FileName./usr/lib64/R/library/Rsolid/Meta/hsearch.rds
FileSize296
MD50CCE8B81E64698A6C071B666EF47EFA0
SHA-13169EC3DBE6840C8102DE6EC710A2DB93E22EC8D
SHA-2564E39F0B72B326F26D576BFA8BA5C80FD7122A5A3150883B248AE5C4D6A429BF3
SSDEEP6:XtV3ep4adKoTiDtF1SeZmIXS+/p6YILMP6pOtOzUjuA7zFZa+ll:XX+xKoOJF1SeZmAFB6XMP6pCdySku
TLSHT1B5E0EB751102502FE0329C30E5F28BFE1C539CD88E82806A9C5DC381B88C07283A80B8
Key Value
FileName./usr/lib64/R/library/Rsolid/help/AnIndex
FileSize14
MD527F86373197F07D636A5545AFF2255A0
SHA-147E504EE5B5100037DBCF1809EA13D94F84AB65E
SHA-25653F18991FDEA62AB48EBCF22AEFE84CC4E79DED71940693E17D1D9D156BFD282
SSDEEP3:Y8cv:le
TLSH
Key Value
FileName./usr/lib64/R/library/Rsolid/help/Rsolid.rdx
FileSize144
MD55EEADC5C981174DBFCD84B976D09CE02
SHA-151A2703FE1A65E1A084034D37A57DD6CE86AED02
SHA-25693FC1C96F9DDDD35BA5A070C872E97BE03428FCB4760027FF53811DEF245D918
SSDEEP3:FttVFHKlV+Z9d1FErNEFmJvnXXpt+8esxHcMXsGBxuE+l:XtVFqPSd8rNHJPHpt+81yUBkZ
TLSHT1D5C02B08F14C7801F80EC63823547502C74B4B24400072C3F60A1F80049760CC73FB18
Key Value
FileName./usr/lib64/R/library/Rsolid/html/00Index.html
FileSize1185
MD595D420157B948958A0E9919A103C3D39
SHA-15C518D01E5610BDDC5A207514542E4D38D16E5D6
SHA-25635764C9076BB0C24E523B4DBADD87280A334A8468F7AA88111B1FA71CF89438F
SSDEEP24:hMTIXF0SspbTXF0PPpM26MFvujMR0F4h/1YZp5dLyNtiXF2g:BepbT4hMMQ4eVLIti8g
TLSHT131216736E0643B177823995186C02ED857616622770A9E4D2F0D347B42093EF22337AE
Key Value
FileName./usr/lib64/R/library/Rsolid/Meta/package.rds
FileSize682
MD5D592391E825B39FA3D45B6205146D035
SHA-170C6098E87BD8260D9B2ACFCFDD1FC776FCA11A7
SHA-256A578FDBDE58CF6CB2884619D9C86E2A579DEB56C797394DEC7079430C4F19C64
SSDEEP12:XFLDnHD/z6LjBgSDwfxNrEE2lSDnoP8LWrHKodLFwrmsaJf4H6fTdPVv6ZCW:XF6L9kfbQEde/dLXQ6fVoZCW
TLSHT125014E904937B362C6A9C2002FD28123D950B75D0A9A20AC18FC29AC8E4C31FAA5A431





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