Result for CC2CB3D2422414F6BE9985827D4633862D5BC1F4

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Children (22)

Query result

Key Value
MD550C6F06B06D43B7241F1F86DF67680DA
PackageArchppc64
PackageDescription Rsolid is an R package for normalizing fluorescent intensity data from ABI/SOLiD second generation sequencing platform. It has been observed that the color-calls provided by factory software contain technical artifacts, where the proportions of colors called are extremely variable across sequencing cycles. Under the random DNA fragmentation assumption, these proportions should be equal across sequencing cycles and proportional to the dinucleotide frequencies of the sample. Rsolid implements a version of the quantile normalization algorithm that transforms the intensity values before calling colors. Results show that after normalization, the total number of mappable reads increases by around 5%, and number of perfectly mapped reads increases by 10%. Moreover a 2-5% reduction in overall error rates is observed, with a 2-6% reduction in the rate of valid adjacent color mis-matches. The latter is important, since it leads to a decrease in false-positive SNP calls. The normalization algorithm is computationally efficient. In a test we are able to process 300 million reads in 2 hours using 10 computer cluster nodes. The engine functions of the package are written in C for better performance.
PackageMaintainerFedora Project
PackageNameR-Rsolid
PackageRelease13.fc21
PackageVersion0.9.31
SHA-1CC2CB3D2422414F6BE9985827D4633862D5BC1F4
SHA-2568CC21E9DD089343F48D2E87A09D52C057FC114B6D6E04453D47A6C7220BCE136
hashlookup:children-total22
hashlookup:trust50

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Children (Total: 22)

The searched file hash includes 22 children files known and seen by metalookup. A sample is included below:

Key Value
FileName./usr/lib64/R/library/Rsolid/Meta/package.rds
FileSize700
MD5B41C3AF2EE70EE35CF94BC4A0EF4D7BD
SHA-10056A79F370FAB233414201C0B0745C3B8B74C70
SHA-25631FE87FAEE2EE5B2F79454E39B7577A34946ABE99190268092254672BAFF1925
SSDEEP12:XF9T1xMPKh8mFzP2xNdKPrA11H8Hi+IE6OMP9lgMvO7Mc1zmSa10+VqEngl:XF9Zf+y21KTALcHi+I8Ev1m7Mc5010+Y
TLSHT1DC014E7E89380338C7081EB7588894085326E3305E51A12A49950470E4BEBED4DDB6CC
Key Value
FileName./usr/lib64/R/library/Rsolid/Meta/links.rds
FileSize102
MD58CF1AA03138913E5F920DB8788854D84
SHA-106468067BAB3BBDD3FC2EA85D20E688004A3E72A
SHA-25662F0B5C3E2B9414A9494DE7AD11EE15EE21407FD9622EA2D55B08736E1E1308B
SSDEEP3:FttVFHp/Gv1zqO5u5r+n3p/xVBMXtXQ8DU2m+Zd:XtVFtG1WO5uxYZ5QXt3Dvm+v
TLSHT19BB0121C4129746AD5330574D3C69C1373DF100B4C6309B23C06342D04C4CC5C5A302D
Key Value
FileName./usr/lib64/R/library/Rsolid/help/Rsolid.rdb
FileSize2738
MD5BFABB7F8A5B5B532A08143542B233150
SHA-1065A1F04C3A046DF2CE3A1A5F9E62C5759E36C0E
SHA-256D99BDFA80B31656C223612466CC86A5ABE17F34A9293C9B8628010199551F1BA
SSDEEP48:TxbZr3lISl/9TImb+XpnH4IgUEiWSJ1K+YrQtrNxYVdiqFYyYhPU3yq:Txx3GSl/tImbYbgUEiLDK+Yr6xIdiqYA
TLSHT132514C7BF6891CF841005C28B41181079DE829BEB223AD795941FE58DDCEF1FD669241
Key Value
FileName./usr/lib64/R/library/Rsolid/help/paths.rds
FileSize100
MD5B091794FBF10D829E538EA5E149378F4
SHA-1143F7314FA48494BD0C634F4A3ACF4796364248B
SHA-256174ED2C95A3025EBA7A2B7E3F18799619B85E4BAF01BB064219BA503CAEC22C3
SSDEEP3:FttVFHp/Gv1Tp+Jn7BixhMEldmosgKc7:XtVFtG1sn7BSaElQ0Kg
TLSHT12CB0121CF74C4856C4931F31429799E080BC58512800985179101E680BC4613CABE87C
Key Value
FileName./usr/lib64/R/library/Rsolid/INDEX
FileSize175
MD5D454BC562761C02412D381C9A347C69C
SHA-1177007733670BF451339D4FB30F6C2632B2E4258
SHA-256BC1CD3489BA8A37B576D916B24400DF8A7F231E00DB0D0981B1AA4CA93CF557D
SSDEEP3:Yp//aLRMJgVEJw18KElKXvGQ1xWxQT3/bCFY:sMMBJ+8KrXvaQTCY
TLSHT176C092B3E2984E22A93BA15758C88BA041B572333B4A6A8F7C1EA4401B4206036367B8
Key Value
FileName./usr/lib64/R/library/Rsolid/data/prop.Hs.rda
FileSize97
MD52ACB03264FA6AB75C0F89FD9FCA99975
SHA-118F0EB0CC822D137117CBB2B77E065E1417DF61A
SHA-256D531C4D7D7107A4953A560CE5897AF646E1A1D8EC05D462E8C6474F850140BC8
SSDEEP3:FttsdFtD3L5WS1KKmrOrDOIJ/n:XtgLUGPVJ/n
TLSHT1C6B01298808A3410D0CACC312010099A11D7B401461C2CCAA2200199C0982C7CB5D92C
Key Value
CRC32375C6D7B
FileName./usr/lib/R/site-library/Zelig/html/R.css
FileSize1179
MD5444535B9CB76DDFF1BAB1E1865A3FB14
OpSystemCode362
ProductCode13543
RDS:package_id182052
SHA-11C99E2730C58AC3191F063F2F79C505D2E890397
SHA-256E0A68E98CA3B506E8181A17634C18CAF903F4CDF983105B36E2D7DFF7E2E30D8
SSDEEP24:5zUURQcpMs91Ep9swJ1Epk61Ep0p4G1EU1Ep0V42Xm4wi54u:5gdkqtCpiXCVQ9u
SpecialCode
TLSHT1E821D6529B6D000AB77F49413A279739429494BDDD6A5F3C30ADB8A4FF81470739AB42
dbnsrl_modern_rds
insert-timestamp1679424460.1894357
sourceRDS.db
tar:gnamewheel
tar:unameroot
Key Value
FileName./usr/lib/R/site-library/effects/R/effects
FileSize1056
MD5EBF0FC819595D631B8BF280C4B049940
RDS:package_id182052
SHA-11E3082B0E541341846B7B27EAC2126CAFB0E00B9
SHA-2562FB8B16BE23C820DAF2E51B7DDFEF61CA4978E561B1D228D546D1B356041F79E
SHA-512A427BB0442BB076EDD389C8553F618B54605012BDA8E62409CA657C7B000404E9E45684C03C2F4444C331A994BB48C98892DECED8153DF04654982EBF900F956
SSDEEP24:dh2pvjejSRmcyAOkHjlnAJAcEWrwYahkB1OOV0Ea:dijeuR5ysHjuecZVHC
TLSHT13911208C6410D6FB6A0104853C4F12CDE21B6763729DA091300DD52F7B09E7562F6996
insert-timestamp1679428382.0662453
mimetypetext/plain
sourceRDS.db
tar:gnamebin
tar:unameroot
Key Value
FileName./usr/lib64/R/library/Rsolid/help/AnIndex
FileSize14
MD527F86373197F07D636A5545AFF2255A0
SHA-147E504EE5B5100037DBCF1809EA13D94F84AB65E
SHA-25653F18991FDEA62AB48EBCF22AEFE84CC4E79DED71940693E17D1D9D156BFD282
SSDEEP3:Y8cv:le
TLSH
Key Value
FileName./usr/lib64/R/library/Rsolid/help/aliases.rds
FileSize69
MD501F6928427619CC70CCF7CF20E4FA284
SHA-15B5FE0AD340CD5DBB2DC92C62AD8D5A6172E2554
SHA-2565D7D5DFB0BBBB08D64D0147EB2526F09683FAE012833732656BBFA43A62A4A6A
SSDEEP3:FttVFHp/Gv1DFsAoeXlAVcAl:XtVFtG1HycA
TLSHT1EEA00258536D8828D853EA33724E4D55940E06864344ADB7B91912083580ED6D59263F





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