Result for 1D1EFA7534704EF715FA89734D4747041A016695

Query result

Key	Value
MD5	DB9CD3D54BD8E067CE03AECF7F7897EB
PackageArch	aarch64
PackageDescription	Rsolid is an R package for normalizing fluorescent intensity data from ABI/SOLiD second generation sequencing platform. It has been observed that the color-calls provided by factory software contain technical artifacts, where the proportions of colors called are extremely variable across sequencing cycles. Under the random DNA fragmentation assumption, these proportions should be equal across sequencing cycles and proportional to the dinucleotide frequencies of the sample. Rsolid implements a version of the quantile normalization algorithm that transforms the intensity values before calling colors. Results show that after normalization, the total number of mappable reads increases by around 5%, and number of perfectly mapped reads increases by 10%. Moreover a 2-5% reduction in overall error rates is observed, with a 2-6% reduction in the rate of valid adjacent color mis-matches. The latter is important, since it leads to a decrease in false-positive SNP calls. The normalization algorithm is computationally efficient. In a test we are able to process 300 million reads in 2 hours using 10 computer cluster nodes. The engine functions of the package are written in C for better performance.
PackageMaintainer	Fedora Project
PackageName	R-Rsolid
PackageRelease	16.fc23
PackageVersion	0.9.31
SHA-1	1D1EFA7534704EF715FA89734D4747041A016695
SHA-256	C51BBD1577A3458384713B8F0F6ECC007450126324567A63B07317041F8C08DA
hashlookup:children-total	22
hashlookup:trust	50

Network graph view

Children (Total: 22)

The searched file hash includes 22 children files known and seen by metalookup. A sample is included below:

Key	Value
FileName	./usr/lib64/R/library/Rsolid/INDEX
FileSize	175
MD5	D454BC562761C02412D381C9A347C69C
SHA-1	177007733670BF451339D4FB30F6C2632B2E4258
SHA-256	BC1CD3489BA8A37B576D916B24400DF8A7F231E00DB0D0981B1AA4CA93CF557D
SSDEEP	3:Yp//aLRMJgVEJw18KElKXvGQ1xWxQT3/bCFY:sMMBJ+8KrXvaQTCY
TLSH	T176C092B3E2984E22A93BA15758C88BA041B572333B4A6A8F7C1EA4401B4206036367B8

Key	Value
FileName	./usr/lib64/R/library/Rsolid/data/prop.Hs.rda
FileSize	97
MD5	2ACB03264FA6AB75C0F89FD9FCA99975
SHA-1	18F0EB0CC822D137117CBB2B77E065E1417DF61A
SHA-256	D531C4D7D7107A4953A560CE5897AF646E1A1D8EC05D462E8C6474F850140BC8
SSDEEP	3:FttsdFtD3L5WS1KKmrOrDOIJ/n:XtgLUGPVJ/n
TLSH	T1C6B01298808A3410D0CACC312010099A11D7B401461C2CCAA2200199C0982C7CB5D92C

Key	Value
FileName	./usr/lib/R/site-library/effects/R/effects
FileSize	1056
MD5	EBF0FC819595D631B8BF280C4B049940
RDS:package_id	182052
SHA-1	1E3082B0E541341846B7B27EAC2126CAFB0E00B9
SHA-256	2FB8B16BE23C820DAF2E51B7DDFEF61CA4978E561B1D228D546D1B356041F79E
SHA-512	A427BB0442BB076EDD389C8553F618B54605012BDA8E62409CA657C7B000404E9E45684C03C2F4444C331A994BB48C98892DECED8153DF04654982EBF900F956
SSDEEP	24:dh2pvjejSRmcyAOkHjlnAJAcEWrwYahkB1OOV0Ea:dijeuR5ysHjuecZVHC
TLSH	T13911208C6410D6FB6A0104853C4F12CDE21B6763729DA091300DD52F7B09E7562F6996
insert-timestamp	1679428382.0662453
mimetype	text/plain
source	RDS.db
tar:gname	bin
tar:uname	root

Key	Value
FileName	./usr/lib64/R/library/Rsolid/libs/Rsolid.so
FileSize	68328
MD5	D34422142377DAF782962E1CD8D8BF36
SHA-1	28BA85A2E9FCD8170E58D122A415923B8DEC60F0
SHA-256	34B9DCF00CB2B8B126C36634EC24B081587A4455644F8D81C3BDF68DB2F0EAFE
SSDEEP	1536:0pDv+U7ahgQXD+l5k7KBYGdzS5gnGtGbqBcPtsP7:iPtsj
TLSH	T1CD63F76BFA4C9D2FC2C4A774858E9761731A511FC26A87C7350806286F87A3CCDBA1DD

Key	Value
FileName	./usr/lib64/R/library/Rsolid/Meta/data.rds
FileSize	72
MD5	5DE26CC08D339E5037CA3CF2522E03CF
SHA-1	42FD77AAFFEEAE459C73FCE4CC6AB359D95E5E41
SHA-256	D4D72102F7EDEA46A3E5EC1E79AFBD8FEE3B20E6A7419028C07A718C0E836062
SSDEEP	3:FttVFHHF5alg/P3FFRjxKIL35jlln:XtVFem/XRjMIL35b
TLSH	T185A02200A0B808E0C803B030000C33C3820FE0F0E2B800CB0282232E003030AC8C2E8C

Key	Value
FileName	./usr/lib64/R/library/Rsolid/help/aliases.rds
FileSize	67
MD5	FB70516A781E56DFD2C129A90E9B1BE4
SHA-1	44FC24CCB4841113AE7DF52D5B5C5617A7A2CAEB
SHA-256	AB11598EAB0ADF7D763D3A89C75B1856822B241BC84D7FE42F5D3E4ED50026BA
SSDEEP	3:FttVFHHF5bEFhjppJDHJEPE52l/:XtVFkFLD+M5C/
TLSH	T1D4A0022A915C911DE96E147999E8DDC0B04F2006DC68898B81524B6E1461D218FD28BD

Key	Value
FileName	./usr/lib64/R/library/Rsolid/Meta/Rd.rds
FileSize	284
MD5	3BCA16D247EAACF7C499C0018F90FA16
SHA-1	45E3F21FBA1E04AECC252D4076586EE7ADB61E56
SHA-256	404D0BC0DA535C3349644D4C18B3719223F9DE98F3E157566B25DB9211D905C8
SSDEEP	6:XtzunCpK1WXVRUH7xkNkpAiVIeZsBRTsCDc/B9jcxaZW8:X4oXVRUbxNLZesCDc/B9YxaM8
TLSH	T180D0EB22CF0A2139FF218833495C277C158B0003C2EEE9C330D8D9E1321A8E0C0AA5B6

Key	Value
FileName	./usr/lib64/R/library/Rsolid/help/AnIndex
FileSize	14
MD5	27F86373197F07D636A5545AFF2255A0
SHA-1	47E504EE5B5100037DBCF1809EA13D94F84AB65E
SHA-256	53F18991FDEA62AB48EBCF22AEFE84CC4E79DED71940693E17D1D9D156BFD282
SSDEEP	3:Y8cv:le
TLSH

Key	Value
FileName	./usr/lib64/R/library/Rsolid/help/Rsolid.rdb
FileSize	2737
MD5	D3B37689B5CFF25D2F308BCB4030EDF1
SHA-1	5069DE6E14D0CB4F81D961786684545A8338DA74
SHA-256	231E5697FC81EE56BD7640C8C24D5442B262C82DC8A8DCEB320D44F4E7796385
SSDEEP	48:huQX+rmgmUFy8aOAOW1lf6GlQBS/gIcDVGBMP+p/WQNlNODWYavrbp7UumhO9dxQ:huQ+fZFysAOGf6TA1M2p/TNTzL6um+/G
TLSH	T16A515CB6DE5022219140A9A1C5F68A62D7371E44D55D98C7B84BE7725B05D320B5C70D

Key	Value
FileName	./usr/lib64/R/library/Rsolid/DESCRIPTION
FileSize	653
MD5	21897D7259A07FA35CB93062F9CC2084
SHA-1	54AAC8A0BA36AE7C769244D02895CDACE986363D
SHA-256	48291969A2114DF61564855638BD9DF977547DE30B44E3839EC5E6FB38A60EA2
SSDEEP	12:06+QWtHbrXFFMB2X+5XaLzcSDx1JvLyLns2799Zv5PX7JFeMfjpViFbJDcdjfk:ontPXFF7u5WDx1JvmLnnDZv5lFe6pAF1
TLSH	T17CF02301DB6BE7A0E90742CE0CF8CB698A345093778954A8FD8F4D108E0130221A32F8