Result for 0B618871A0FA5C41AEF3EBACAA7D44AAD7743F90

Query result

Key	Value
MD5	E7E9516AD910ED713DCD6B5B9C43BB89
PackageArch	armv7hl
PackageDescription	Rsolid is an R package for normalizing fluorescent intensity data from ABI/SOLiD second generation sequencing platform. It has been observed that the color-calls provided by factory software contain technical artifacts, where the proportions of colors called are extremely variable across sequencing cycles. Under the random DNA fragmentation assumption, these proportions should be equal across sequencing cycles and proportional to the dinucleotide frequencies of the sample. Rsolid implements a version of the quantile normalization algorithm that transforms the intensity values before calling colors. Results show that after normalization, the total number of mappable reads increases by around 5%, and number of perfectly mapped reads increases by 10%. Moreover a 2-5% reduction in overall error rates is observed, with a 2-6% reduction in the rate of valid adjacent color mis-matches. The latter is important, since it leads to a decrease in false-positive SNP calls. The normalization algorithm is computationally efficient. In a test we are able to process 300 million reads in 2 hours using 10 computer cluster nodes. The engine functions of the package are written in C for better performance.
PackageMaintainer	Fedora Project
PackageName	R-Rsolid
PackageRelease	34.fc34
PackageVersion	0.9.31
SHA-1	0B618871A0FA5C41AEF3EBACAA7D44AAD7743F90
SHA-256	9E888B7F60B2F54B8F681BD529A32428C571F201FAD480A8A2EEC0CD0ED58F36
hashlookup:children-total	24
hashlookup:trust	50

Network graph view

Children (Total: 24)

The searched file hash includes 24 children files known and seen by metalookup. A sample is included below:

Key	Value
FileName	usr/share/R/R/nspackloader.R
FileSize	1058
MD5	D6C68F1FE41CED6E98A766A3757313DA
RDS:package_id	293685
SHA-1	12C0D3D6E3F5B5D749C93FECA122CBA34B466AB5
SHA-256	570CA456B280CDEB201EF5EBDF22DC8F80092E2C0C68E33C7F73340E420F3759
SHA-512	6824A8335BC36AF7808471FE603E2C4FC7B77BD08D61DF060B80444424563B0764DE87AAD8D6D20E926D02AA20E22528FFA8ED517AF5F35A01ACFA8BD2A90590
SSDEEP	24:do2pvjejSRmcyAOkHjlnAgAcEWrwYahkB1OOV0Ea:d1jeuR5ysHju3cZVHC
TLSH	T1FB1142886410D7FB6A0104853C4F22CDE31F6723729DA091300DD12F7B0DE7552F69D6
insert-timestamp	1728198681.437601
mimetype	text/plain
source	snap:VCjprGsSZiPuV3CmQViE4TvPMKTOlaiL_119
tar:gname	root
tar:uname	root

Key	Value
FileName	./usr/lib64/R/library/Rsolid/INDEX
FileSize	175
MD5	D454BC562761C02412D381C9A347C69C
SHA-1	177007733670BF451339D4FB30F6C2632B2E4258
SHA-256	BC1CD3489BA8A37B576D916B24400DF8A7F231E00DB0D0981B1AA4CA93CF557D
SSDEEP	3:Yp//aLRMJgVEJw18KElKXvGQ1xWxQT3/bCFY:sMMBJ+8KrXvaQTCY
TLSH	T176C092B3E2984E22A93BA15758C88BA041B572333B4A6A8F7C1EA4401B4206036367B8

Key	Value
FileName	./usr/lib64/R/library/Rsolid/help/paths.rds
FileSize	117
MD5	DB6A536176B8AC745204C2C046197EB6
SHA-1	1826D68B93530E6E11A7E1ED0FC67338ED3A12DF
SHA-256	EFF861404F73E5E00385E52AD52417A73CB69E50F8A87AC7BA99CFC2F6429A4C
SSDEEP	3:FttVFDuTwMnkF7M1nLCgZo1Kg/T2BNWd6vWlll:XtVFwK76b1AT2kl/
TLSH	T109B01225D6A5E99AC002C830245E63C14B161CC57AD2B1936D905F0702F0417ACC753F

Key	Value
FileName	./usr/lib64/R/library/Rsolid/data/prop.Hs.rda
FileSize	97
MD5	2ACB03264FA6AB75C0F89FD9FCA99975
SHA-1	18F0EB0CC822D137117CBB2B77E065E1417DF61A
SHA-256	D531C4D7D7107A4953A560CE5897AF646E1A1D8EC05D462E8C6474F850140BC8
SSDEEP	3:FttsdFtD3L5WS1KKmrOrDOIJ/n:XtgLUGPVJ/n
TLSH	T1C6B01298808A3410D0CACC312010099A11D7B401461C2CCAA2200199C0982C7CB5D92C

Key	Value
FileName	./usr/lib64/R/library/Rsolid/Meta/links.rds
FileSize	118
MD5	ACD6219CD7B6E392F9AD54472FB58AF7
SHA-1	238472A03039CD202AB11A3E0A4BC4051029C6EC
SHA-256	B5757F600FABB7D20ED081498B05FA497D1A03A245C61441DE4945880604BAC0
SSDEEP	3:FttVFDuTwMnkF7kxiW6fH50QJEp2rj+:XtVFwK7qiW6f5ZQ23+
TLSH	T1F0B092669A668571E89A0431A2BC27E46A54687E34627A972F0859080282607A8C326C

Key	Value
FileName	./usr/lib64/R/library/Rsolid/Meta/Rd.rds
FileSize	303
MD5	83055CF3C52D8F9FB2A6E15CA286E89E
SHA-1	3ABEF2FC93E16CEE8F6AC0D5321919107C331E80
SHA-256	1073BAB8F1606B820B93AC584BD48763CE289AC229ABE290A2752DD4A5514B72
SSDEEP	6:XtzuD1WLOh03fcjfLNrHH38xKZxIVHHQIVmP2QMU4AByvhDzM/:XWMFUlHHYAIVHHQIaFMlmUDK
TLSH	T1A8E07DA64910F068FC2D9466345A11A1A4F406C80B1800222184CB304DE516045DA18E

Key	Value
FileName	./usr/lib64/R/library/Rsolid/help/Rsolid.rdx
FileSize	165
MD5	E5E7951D78C41199B515BD35C1EF6336
SHA-1	3BBF9573013DA4C0878C87EAA68E94B3F3970A7F
SHA-256	5DA68EFEE709CA2A14DB06249BD7EF7B24E24A874AEA19A815149031D04EFE92
SSDEEP	3:FttVFDuTwMnkJWnTc7pYf9hsloTqsahFgmoAAGI/YI3XPW7xGYnRcp:XtVFwmgTc7Sfoou07EDu0NA
TLSH	T18EC08C2BE729A19392193432A90186884F4911EEA426B9851A562A843B48447AECEA56

Key	Value
FileName	./usr/lib64/R/library/Rsolid/help/AnIndex
FileSize	14
MD5	27F86373197F07D636A5545AFF2255A0
SHA-1	47E504EE5B5100037DBCF1809EA13D94F84AB65E
SHA-256	53F18991FDEA62AB48EBCF22AEFE84CC4E79DED71940693E17D1D9D156BFD282
SSDEEP	3:Y8cv:le
TLSH

Key	Value
FileName	./usr/lib64/R/library/Rsolid/Meta/hsearch.rds
FileSize	322
MD5	BB8B3D4CBBDADC797F6767CC75603B60
SHA-1	495CF348F5DDBA7BEB624C96969A797510EB4170
SHA-256	BBADA7E0091FDCD8D3E409D4CB92FCA2A6C58BB8ACD49F6F6A5A9648584DDEAC
SSDEEP	6:XtSVG2uTMcAE/cXMe0tD1e/62f/5SfW5VAzK3sYyBi3noXcuvksatUUEAC:Xw0LHhkXX0tpeCQIXmeiRuvAjEAC
TLSH	T1A3E02D42C00330C3AAAD80C7C4E183EF2B48422694E58912FBC802939530980470E2B8

Key	Value
FileName	./usr/lib64/R/library/Rsolid/help/aliases.rds
FileSize	86
MD5	F4828121494815ED5EDAE090B0EA55BE
SHA-1	5088B3E07EFC10B66998EC0C4A3B01344220B125
SHA-256	F08C5E6893CA79C83DC762F5C54D682841478F4EFAC0718B301D0689FD8337D5
SSDEEP	3:FttVFDuTwMnkF7590kpJv88VPt:XtVFwK7j08
TLSH	T125A02208C2838B23C00B203008CCAFC0C8020C08BCEBBBCB08A223000F020833CC3338