Key | Value |
---|---|
FileSize | 84306 |
MD5 | EAEF008AF5F299DCDDD73FD2DE0A9966 |
PackageDescription | profile hidden Markov models for protein sequence analysis (docs) HMMER is an implementation of profile hidden Markov model methods for sensitive searches of biological sequence databases using multiple sequence alignments as queries. . Given a multiple sequence alignment as input, HMMER builds a statistical model called a "hidden Markov model" which can then be used as a query into a sequence database to find (and/or align) additional homologues of the sequence family. . This package contains documents and example files for the hmmer2 package. |
PackageMaintainer | Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com> |
PackageName | hmmer2-doc |
PackageSection | doc |
PackageVersion | 2.3.2-7ubuntu1 |
SHA-1 | FF269F866D13C7660925152BFB08FAEFFBC6A85D |
SHA-256 | 398415F2EF4FED4CED3E7BF190488C5F0225D0AC3DD76ACBE3629DA175D7204C |
hashlookup:children-total | 15 |
hashlookup:trust | 50 |
The searched file hash includes 15 children files known and seen by metalookup. A sample is included below:
Key | Value |
---|---|
FileName | ./usr/share/EMBOSS/test/data/hmmnew/Artemia.fa |
FileSize | 1489 |
MD5 | F336678977451D5C30530BFAE1EF46B8 |
RDS:package_id | 182052 |
SHA-1 | 56539F1F150B2D4C127AF15076CA54C81DB46D3A |
SHA-256 | 97223FB1E39A12C712773E69FEAB56D6B161E969C2A661598E49516B10B0E54A |
SSDEEP | 24:BgxwgCn38aOwwUUZtfbkBxhGCoBZVhpiUjjZrYfOVP715Esv1UMmLiPZsZO61aPC:5ITfbYhGdBZV6UfxYfOh9mMmLiBsZj1R |
TLSH | T19531B7E783D5330655599B522C2EE4440D989AD3A630D17F66474012E5E3F3325E3664 |
insert-timestamp | 1679428038.884613 |
source | RDS.db |
Key | Value |
---|---|
FileName | ./usr/share/doc/hmmer2/examples/tutorial/pkinase.sto.gz |
FileSize | 18754 |
MD5 | 831233E1DA387A75CB3B62FFEE940B5A |
SHA-1 | 9A6D12105BC64CA96A57D7AD44FAF2EC91327C1E |
SHA-256 | C121ECDFBFCEC2F52EA71F9DF05D1E41FA78C9042B8752BA6AFF97945B9565F8 |
SSDEEP | 384:ZMjmuYIPwr+AE5oGaQycvaJYf1A69xvaKIUb4cKab554/suQf5vyJrA:ZMiufe2aywi/Meb4HaX4RQRvN |
TLSH | T1DC82CE2AD4172CACD4E1EF3889DA1844E22E2DF586BC33066985C92F9D431873EBDDD5 |
Key | Value |
---|---|
FileName | ./usr/share/doc/hmmer2/examples/tutorial/globins630.fa.gz |
FileSize | 23575 |
MD5 | F3D1E8B3C72B42C49BA31DA6FC5A45DE |
SHA-1 | 5E9F5ED8A04BA56039F9E4CF78240FD3C2F34BB2 |
SHA-256 | 2A1553B1F4B6D3A7E87CF0A9753A85A20DB8E849880409018C58ADE04D00C7E1 |
SSDEEP | 384:yIwy0R1+BoxP+O8JZRye538j1Jnk+/FNQwVO3n8EIBYK6CvLhgdEDzD3OnkH:0b+BoxWxDd5IQt+aCz66zjq2 |
TLSH | T11BB2E16608FE0661A489A713A8D8C8B758520F6DAC8F13EAD77123D9433BED899407CC |
Key | Value |
---|---|
FileName | ./usr/share/doc/hmmer2/examples/tutorial/rrm.sto.gz |
FileSize | 5831 |
MD5 | C5BFBF36C579944AC22923802FD36381 |
SHA-1 | D2B4BC2DE18222D3B6C25C93E89918EEB6EE27E2 |
SHA-256 | 7DD595B06D9EBD7E3B4EEE4E49B630F05F18BA34AF8B8668BAC873B46C7B7F38 |
SSDEEP | 96:aYnEJQvW++vk1vSR0YR4htFFd9NyRzKk4qx1y2EkMkLL2qafFWImASDUE46cNuMt:aYEJQ+3vkoRWtF3y8qx1FEBXvtE46c4Q |
TLSH | T175C18D597F58F7F2E562ED58A44435C79D223A710854EDCE588BB92D0436210022D793 |
Key | Value |
---|---|
FileName | ./usr/share/EMBOSS/test/data/hmmnew/amino.null |
FileSize | 418 |
MD5 | C2FE88986943ADF4097FD63A21ADE4AA |
RDS:package_id | 182052 |
SHA-1 | 335B78B2EBA4F8F245607085D6C2286660C83489 |
SHA-256 | 10399C0F00E9BBFAB2531F8C5F7A98E9DC0F28CD4D1F2F53855FE5875668005A |
SSDEEP | 12:46DoEARk9KZWY4Kl1q7COmR195NQXy9xrMFgnkIo/:xxEBl1quhQArMCro/ |
TLSH | T1B6E061D87B07279AD34C4A370B1B24F369840AAB27D939550C72D11DE31056437F5DD0 |
insert-timestamp | 1679428038.8574262 |
source | RDS.db |
Key | Value |
---|---|
FileName | ./usr/share/doc/hmmer2-doc/tutorial/7LES_DROME.gz |
FileSize | 4036 |
MD5 | 9B900E1A54F7945938FD6B3FA179E9B8 |
SHA-1 | F33A390A11AA351397CE3F421A3D55FDC00794C9 |
SHA-256 | B574657DBC6B7E9C91F2E5D875AEA8EFF88EAFF5FF44A4320CC60217BB4238F3 |
SSDEEP | 96:PjW8NWrXMaPNRO8R/2tP8K7yTJkcnAg5uZTKB1KWvEC+K:xNWAMN4E+tP8EyTJfnAQuZT6oQECd |
TLSH | T13F816D5A0C35DAD55630BBBDDF7A273FD8D9A0CB800F0573B53804711904141ECB0AEA |
Key | Value |
---|---|
FileName | ./usr/share/doc/hmmer2/examples/tutorial/fn3.sto.gz |
FileSize | 11077 |
MD5 | 26FC69A8EBE1D7BC63993BAEA047EE92 |
SHA-1 | 9D0F80C5D28936CEEADA535795BB3F358783DEBD |
SHA-256 | 3E4A4EF12F22F746BDE3AFEB0E9C68DF1FBFB0D880469F874F6A5CB8837251BA |
SSDEEP | 192:gylgC9fsX2HWHXfblOuWkNE0eKcGteeGt4Qw2R+jkjQ74Yz01n:gylg2EcWHXJOLiE0ehGttGtvFjQ7C1n |
TLSH | T1B332BFE0C2646FE3DA9CA75C586CC2CDBC3D27A1B674000499EDB5D756922F0B1A4BAC |
Key | Value |
---|---|
FileName | ./usr/share/EMBOSS/test/data/hmmnew/nucleic.pri |
FileSize | 745 |
MD5 | B3953446B941D744EED4D208D2F2B5EF |
RDS:package_id | 182052 |
SHA-1 | E6979D0D3E0CEAA0CBCB080BBC12E59BA2EDA6E0 |
SHA-256 | 4C24C84767A28DBD4B5CDC6C35735E9387C2BD98F8207BE899E35561849EE3FD |
SSDEEP | 12:wpoEVuYKZWYwmJNqVPGeqKLZYkIT7hI98vaHngIOF6HcTnjGP1qKLiYKcKLHY5:wp0MvmsnkTnje7 |
TLSH | T1A701262DFA18FBA89494D0B245BE20916C2E83FC9FCA26493C1EA679634359462953A4 |
insert-timestamp | 1679428038.8660262 |
source | RDS.db |
Key | Value |
---|---|
FileName | ./usr/share/EMBOSS/test/data/hmmnew/nucleic.null |
FileSize | 195 |
MD5 | 2671C073962C5A820E3C3507B4241098 |
RDS:package_id | 182052 |
SHA-1 | D94BEDDAC739BC69AA65B63152F3C72A0874E79B |
SHA-256 | BDBB36D9E7372469F4DE58083CB30C149E0737EDA42234AC7C1CC496C29B2AAC |
SSDEEP | 6:SDDoELcbtFm3GUKFwgUaADEQxexQFGmIVGf3:KDoEA639KZWY4eWFGmIsf3 |
TLSH | T160D0228D3A4E678EC14089210A8A01C38F04061902ED75A05C3A1808AB1094030C00E4 |
insert-timestamp | 1679428038.8445075 |
source | RDS.db |
Key | Value |
---|---|
FileName | ./usr/share/doc/hmmer2/examples/tutorial/globins50.msf.gz |
FileSize | 4584 |
MD5 | 338544F9F0910C7A559046E6EF7D3F35 |
SHA-1 | BCABF913AD34D18C52511D17964A166168973C2C |
SHA-256 | 0F1851738059814FB59E5B46E419A5AEE8CAF97D122A9C3282DA0FBDB67C60F1 |
SSDEEP | 96:KCeKoTF+voAVvRwRIHHAdtLVLLLOwXwlBGD0ZBQ48gWiormJjGZW:K7KoTFsm5NL7XkBGDEJ8XdrmL |
TLSH | T1ED917EC51B4BF241F4C85B14C20BA7EBB84953D12EC7CD0AB1F5A07748EB08C2A5B16D |
Key | Value |
---|---|
FileName | ./usr/share/doc/hmmer2/examples/tutorial/rrm.hmm.gz |
FileSize | 5994 |
MD5 | 1B436D0EDB4C264EC53995750D4C0283 |
SHA-1 | 83DC3BF2FAEC0E14ACA11610F0CBE8DCBF21D79A |
SHA-256 | 4BF6B66E76B233181C818CA4E4D631EFEAAE2C2DAB2D444690FDCA0B8E5E27CD |
SSDEEP | 96:9ILOwmMOV7Qk3542Wc2KuwkxuV7eoihMBCbORk7yv93vmIiuQGkuFuHF2TCrJdfO:9ILOwuV7j3HWAMPowMBC3evpvmlu4Flw |
TLSH | T110C18D4C93C9725DD3D9200692042E6193AD8D2EFE5257928CCFA7ECFCE1A10D277893 |
Key | Value |
---|---|
FileName | ./usr/share/doc/hmmer2-doc/tutorial/RU1A_HUMAN.gz |
FileSize | 2804 |
MD5 | 9F6C3BD28D1B0D53BB95781FA0B68321 |
SHA-1 | B6E789AA97891EEF8C76FA410593AB5C9F6B4242 |
SHA-256 | 0233A55B611BD65CF3FBD5BF95B082FD77278ED96DBC5D5E43962112486305F9 |
SSDEEP | 48:XKYe3meCQef/yaRVl+Uabb3M1E0fBYpfj7LdVnWbQRe/9xiW754i:6AQoaa+HoEa+fjnZRe/9xF7/ |
TLSH | T177513D9645046465F86823675A68FC4C3D6703CBD74E25FFE20E2DE0E559D1C890ED4C |
Key | Value |
---|---|
FileName | ./usr/share/EMBOSS/test/data/hmmnew/amino.pri |
FileSize | 3014 |
MD5 | 12F2EDE62A307DA1212C1C862DF18CC6 |
RDS:package_id | 182052 |
SHA-1 | B6725560990E3204FFB1A9D9C5E861A798F7D38D |
SHA-256 | BB9FD8C6AB3DC00A5CEBBED65F18F2C66E050FFCEED0262663B9BEDC0203C22D |
SSDEEP | 48:SBOdFi+wsMbfVVc4AHYnZ0Yox0Opu5pRHJyzSzAmvfFvkm5GGcRL8O1N:SBOdFHws+Vy4AHYqOuapRHQMlvYGBsN |
TLSH | T1055102F8C18461D0B494E924CF37BDB5908A75778EF3E488315EC05EE352AF69B14E84 |
insert-timestamp | 1679428038.8934946 |
source | RDS.db |
Key | Value |
---|---|
FileName | ./usr/share/doc/hmmer2-doc/changelog.Debian.gz |
FileSize | 1983 |
MD5 | D21F39EB1E26A5FDFE6227B017222D05 |
SHA-1 | 95FDFB4F5166C112B0C4401A16DD3C79A8BFCBEC |
SHA-256 | AF561BF72EF486BE98A04AEDA28AEFAC6B304DBA2BFBF6BEE4D3ECB3BA3E1877 |
SSDEEP | 48:X+6a+HDBGoYHAndLXhs8UxPoQ2fYKvbIUjwEs8fhOsI3e:OpKdtbUfisgVJOze |
TLSH | T17541E8FE523F045A787BD4F8B90C197EEFA0D9B784C7754C948056C2646DF51850BB88 |
Key | Value |
---|---|
FileName | ./usr/share/doc/hmmer2/copyright |
FileSize | 1256 |
MD5 | 4085B831F3DF3C61A9207C64E33DE39C |
SHA-1 | 3F87779D1D13237F52E1CD391B56017AA19A5E5F |
SHA-256 | B10C39EC6821F35A8CB8EE45583AC25E05A19D98CC4B10C0FC1888BEAD0B9091 |
SSDEEP | 24:g0tg7Rg5+rZzCOLx2pk1Tlbci5OKVTbVMglH5yn5lpL9:IljC4SmZciXEg6n7Z9 |
TLSH | T1EC21428D6944C37F86802542788658DFE32AABEB31BDC0D1D00E839A940AE3513B59E8 |