Result for EFFD9DC5A46B41A2EC94307E84478ECECB92B168

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Children (15)

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Key Value
FileSize2340880
MD5A9829EF084C25478C01E12D1CD663AF0
PackageDescriptionTop-down proteoform identification and characterization (programs) The TopPIC Suite consists of four software tools for the interpretation of top-down mass spectrometry data: TopFD, TopPIC, TopMG, and TopDiff. . -TopFD (Top-down mass spectral Feature Detection) is a software tool for top-down spectral deconvolution and a successor to MS-Deconv. It groups top-down spectral peaks into isotopomer envelopes and converts isotopomer envelopes to monoisotopic neutral masses. In addition, it extracts proteoform features from LC-MS or CE-MS data. . -TopPIC (Top-down mass spectrometry based Proteoform Identification and Characterization) identifies and characterizes proteoforms at the proteome level by searching top-down tandem mass spectra against a protein sequence database. TopPIC is a successor to MS-Align+. It efficiently identifies proteoforms with unexpected alterations, such as mutations and post-translational modifications (PTMs), accurately estimates the statistical significance of identifications, and characterizes reported proteoforms with unknown mass shifts. It uses several techniques, such as indexes, spectral alignment, generation function methods, and the modification identification score (MIScore), to increase the speed, sensitivity, and accuracy. . -TopMG (Top-down mass spectrometry based proteoform identification using Mass Graphs) is a software tool for identifying ultra-modified proteoforms by searching top-down tandem mass spectra against a protein sequence database. It is capable of identifying proteoforms with multiple variable PTMs and unexpected alterations, such as histone proteoforms and phosphorylated ones. It uses mass graphs, which efficiently represent candidate proteoforms with multiple variable PTMs, to increase the speed and sensitivity in proteoform identification. In addition, approximate spectrum-based filtering methods are employed for protein sequence filtering, and a Markov chain Monte Carlo method (TopMCMC) is used for estimating the statistical significance of identifications. . -TopDiff (Top-down mass spectrometry-based identification of Differentially expressed proteoforms) compares the abundances of proteoforms and finds differentially expressed proteoforms by using identifications of top-down mass spectrometry data of several protein samples.
PackageMaintainerThe Debichem Group <debichem-devel@lists.alioth.debian.org>
PackageNametoppic
PackageSectionscience
PackageVersion1.3.0+dfsg1-4+b1
SHA-1EFFD9DC5A46B41A2EC94307E84478ECECB92B168
SHA-25611D75A9ECC78CB7FE265FD1C81AD16E4BA2AF9CBEC91C972C10F2E0193E47FD5
hashlookup:children-total15
hashlookup:trust50

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Children (Total: 15)

The searched file hash includes 15 children files known and seen by metalookup. A sample is included below:

Key Value
FileName./usr/share/man/man1/topfd.1.gz
FileSize1782
MD50F1ACE6CE2995E873451A8C2898E075C
SHA-1F04FD48BC3BAA084611E86DC26AE4B48BE44F274
SHA-256B329D87F5B90C41E97EC98D417CDFF48C0F7CB3237F4F968B4396B3D3220326C
SSDEEP48:X8EYTifWKUlTXI0B82L44MYsGM0I0Ta9Aul:sEYTi3Ulc0K2hsGMgTaey
TLSHT1CE314B0CDE196BA4CCF50D6B332051100693BF723285C136BE366B80498561242C8D67
Key Value
FileName./usr/bin/topfd
FileSize1472992
MD5881C3192BDEE6034A4E89C69A346AFE9
SHA-113BE13E2C7AB0F198F82BF26D0B86824A4BAFA9D
SHA-256BF1D4ACB93C66006590E97B93371A1135A9DB12C8AF66FD76467992B82F3B250
SSDEEP24576:nzc4Lgl/QZqWLCKMEGwCVLQLKA+RVjSXEZJyWCNT/98KMbZC2WVOBaqgGEhEIWr7:nzxUQZqWLCKMEGwCVLQ21RgXEZoWCNTP
TLSHT10C654A0BF5E908AEC495C8B49247D667AD317C9528247D7F708CEA740EB3B304B5E7A2
Key Value
FileName./usr/bin/toppic
FileSize3131880
MD5EF3F0BECAAB6A3D1B8FC969B9BEC2146
SHA-1FDA36A60E9F3049758012038D6B3BF192B4BB089
SHA-2560BA3A1C4D196F30133D7E88B3CFC2C859741E22DA2F9005C757F2DEA06F471FC
SSDEEP49152:pVNYgQ1kAOQs8iD55o/jEtKa0Encodg2vbmeJz4bQRMElipqOCEd1sIC3C7kiigq:pV6gQ1WJHMxDCsiggc7Te/wtIL
TLSHT18AE54A0BF1E918DEC4D5C5B99247D6A3A9307CA560303E7E6198EA740BF3B305B9D362
Key Value
FileName./usr/share/man/man1/topmg.1.gz
FileSize3535
MD547CEEA9F6884D8FCACB81BEE2B3A5B99
SHA-13E15EE2D09377935673E9F74002F8FCD0EDCC582
SHA-2565C3CCDF8A89CF090B8E3309981E2B687E2CCB5EBF4346DD2724CC2E8C0266FEE
SSDEEP96:cPBsgiFqqjLokIooEdVWGAPUJNi2q7OmgSeycmt:EUFZj/IAW93/tghmt
TLSHT121716EC29EC1A8E2D7AEE94136E2ADF7C5504743D14C7DE567B082912323BCA459F05C
Key Value
FileName./usr/share/doc/toppic/README.Debian
FileSize395
MD59F1BE0E5BC01366624E688E7A6289E9D
SHA-12A85C921E54A42617DD7AE8CEFBEFECEA0ECE908
SHA-25615B781A7178B651A4AE147E3BC4C42F56C13AF7D7E7EB12803043BDE448FCC2D
SSDEEP6:GLxN82GHe1RvA75fKSMlGde/Ap2dZII1Sx4cXUVEC8FQ6N48ZiaGpcEBNg7HIv:EN8wc5jMlGdfMPcSEA6+1BNkHS
TLSHT1C0E0F1F30393B7233CF14AA9510C31849F1B18D4613722B408544C16E207812B2826F3
Key Value
FileName./usr/share/doc/toppic/changelog.Debian.gz
FileSize642
MD5F0B28350E1E2A694631799991576927A
SHA-100E8DFADFABD41BF89D5AB55A041C881CCE06D66
SHA-256564B1C505C6FEE8F67AE0B48AA02ED972884C31677511AD374AE0C308769CC30
SSDEEP12:XgxQwifeaD1jTjpo+Vo3KCDl0ZyuIQY1XBeXgVMleVFz4X6LS5n9eN:XgxEfea5jTVw3KCDiZ6TRsXGMM34Xv5U
TLSHT102F068E37158A0CC89ADC2F57ED4509D0F6EC37F1C44090351E5464A71B4C9A661CB53
Key Value
FileName./usr/share/man/man1/topdiff.1.gz
FileSize1427
MD58508CB11FB0062732D842992C0F5103F
SHA-1BDE443625DCA168A2E7B457750FF4A3B42BA6CB5
SHA-2564451147E24F8EB7B0C1796C7D247615230DB170690A00B5E9D89099FB0896A9E
SSDEEP24:XDTVR9+7cKMqh7f4W6vUqXBZz8zqz1RUWBoyg5mnfw9Qnt/9RqJEvlwCEIs9R:XXKjhz4/XBZzj1ewo6ptSJEvyF9R
TLSHT1FB21C93C294C4A39CFDFE655292101AD9611A40492A1366EB509C5F0CF663BCA679573
Key Value
FileName./usr/bin/topmg
FileSize3193320
MD5218E47122FF3BF09807C93B655502432
SHA-1B57A8A59763474D38BEDE78C14CF5569C2A4D999
SHA-256B4FEB45AF6B10CD7D4F8CA1BBBA940A4EE8D473C40A86A242CDFD91758EA237A
SSDEEP49152:JP483UjyY9mLSKqWB+2P2ESAtQxlXiTQj01TBdn+5GG3qQthkycL2XUyLBM1ZLQH:JPdk/OO5FzXWZLQ5PpKR/11f
TLSHT1B3E54A0BF1E918DEC4D5C5B49287D667A9307CA524303EAF6098EA750BF3B305B9D362
Key Value
FileName./usr/bin/topmg_gui
FileSize3340848
MD5AAA08482E76EB7CB36D2EEA20742ABCC
SHA-1085746F74AB40A2AB2E6089A1576C6DF289249AF
SHA-256602EDFFBE54D1F64B74B2538281D45E6DD63BE034F05C2B8901643D5E5464CFF
SSDEEP49152:I0vmQ3ZZnB7NPqy8S8Y0z1Am7++yYNGT7wVhl82sEo/tks3XauTtRocAs6253462:I0hJZB5AykRs6WSf/zKC9jSO5vd
TLSHT14FF54A07F1E918AEC4D5C9B49247D663AD307CA960307EAF6098EB750BB3B305B5D362
Key Value
FileName./usr/share/doc/toppic/copyright
FileSize11547
MD544023D008A494F53E0A77BF27858AD33
SHA-104B3862797896C9D46DEC86867C000B36D5CEB17
SHA-2566A4EF227AE9B870F453F68F6BCCE2490EBC0969509B74B3E63E4F999AD8FDFF9
SSDEEP192:3mD8TPzHbvt6DeOXQH+TQHanHmTQrs6r1P3H3JajmbM2IOrXijoLt3i73hU9pjSK:3+8TP/vQDnXrT5kQrsINXJMmbfPrSjAz
TLSHT11832C71EBDC00B7309DC1AD2BA1D64C9B12AA41F7A668ACC645EF2150BB741DC0F6377
Key Value
FileName./usr/share/doc/toppic/changelog.Debian.amd64.gz
FileSize228
MD578D80179B40FDCEFDC0BD7E3348476F1
SHA-1DAEBF38A59590AB971058C938AEB7AA841DECBA5
SHA-256A99F76F0A02DA4D8FA47D112B0CF0CAA551672375066D713C4E2AF41A4544EAF
SSDEEP6:Xtiee39h0B66zfmrDq5M11YaMxCPnGUh5CtJnc:XO3X0k6irDqO118xCPGUh5CQ
TLSHT10DD097F1E2AFF86BB8F66232900904068435B468304E6AD0149423280F01BCD369C51B
Key Value
FileName./usr/bin/topdiff_gui
FileSize2144808
MD5F86CB5115A7BEDB6B96E7EC8E4791351
SHA-164D56F4801801AA3371AEFD4EF2136793E428A18
SHA-256D862294FF9A5FD29FD7D19864C981C9842937F474CC2F583D8434D7D1899B9BD
SSDEEP49152:E8WkX4m5iV9Sez4qwOibJbxszlWMaNtOUGbOntSOte9CCi2PQk1ys+jjMQpMvHLD:E8Wq4m5i3pHq1k+OLxu87IC
TLSHT13DA54A0BF1E9089EC4E5C9B492479663A9307CA964307E7F718CEA740BB3B305B5D762
Key Value
FileName./usr/share/man/man1/toppic.1.gz
FileSize3706
MD551FBC0160B68799D7D6FA1F9C9BA1936
SHA-1A927CC04971DBEACBCE28ADBE20D876068D9198D
SHA-2566C5B9F79EB72EBC28F8317179A26C058F199DCF8FB90D53E78B12625714D2A6B
SSDEEP96:B6xe0FBZWYnxj6r1hIL0tVjjhhetKLb00leq:B6xBnZWYU1hKymULb00Mq
TLSHT153717EAD3A874C40D25FB2CAC0C7A912EB36C20FCDE8F8F5255E75353159B541205999
Key Value
FileName./usr/bin/topdiff
FileSize2062816
MD51BCCEEE5B9453FC4425D207FE775C5DF
SHA-1D78560DD137EF61FAC62968762A9E8A0DC5DC360
SHA-256C7D0411718BEFF708DA54C114B1B3D27AA1474E25EC473454B139917201F71F1
SSDEEP49152:Em/5BSt4Gk5MFZxD4n+9SeH3FvCXtc6nbEFK871A1PE4JFjbWOLtrQxn2f5rpXaZ:EmRBCX0MsSp4+kfK+kyrA
TLSHT11DA53A07F1E908AEC4D5C9B4A2479667A9307CA524307E7F718CEAB40BB3B305B5D762
Key Value
FileName./usr/bin/toppic_gui
FileSize3279408
MD5284EB7950D529CF88B10ED4FFCAAA3E4
SHA-16F8FCF1F5B32C02ADC2CC103CD11CBC5A373040A
SHA-256F8B1B7689EB1144BD6CD17F6F129FEF02F8DB1CB5882E2F62D6FF45F584CCA18
SSDEEP98304:znCUaOH0J8DRzCd2Ecya3QtrdVeDwjSL:bCOLFq7eDw
TLSHT1DBE54A0BF5E9189EC4D5C5B89247D663AD307CA920303EBF6098EA750BB3B705B5D362





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