Key | Value |
---|---|
FileSize | 37196 |
MD5 | 34B60A8C7719268FD0FF205968FFB89E |
PackageDescription | map Pacific Biosciences reads to reference DNA sequences (Python2) pbalign aligns PacBio reads to reference sequences, filters aligned reads according to user-specific filtering criteria, and converts the output to either the SAM format or PacBio Compare HDF5 (e.g., .cmp.h5) format. . pbalign is part of the SMRTAnalysis suite. This package provides the Python library backend. |
PackageMaintainer | Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com> |
PackageName | python-pbalign |
PackageSection | python |
PackageVersion | 0.3.0-1 |
SHA-1 | D91A3348BDBC2AC17FAEA229AE3B7E40CE27FADB |
SHA-256 | 8358110248860567B017C6D519222AEC26B7BFB94B2F3D74E3941DB22851BB6E |
hashlookup:children-total | 32 |
hashlookup:trust | 50 |
The searched file hash includes 32 children files known and seen by metalookup. A sample is included below:
Key | Value |
---|---|
FileName | ./usr/lib/python2.7/dist-packages/pbalign/alignservice/bowtie.py |
FileSize | 10869 |
MD5 | 8921166CAB55FDAF843C508D641D1985 |
RDS:package_id | 184818 |
SHA-1 | 00A55ECBDAF006C2B88841105EA7AC1B36D1016F |
SHA-256 | 97ECFE51CF281011F3686D50DEB1C9D50FD7BFA2BCA9C7D7A1920FB055B601A4 |
SSDEEP | 96:2g9rYJ2rYJM4tDFAt3S/pisCtya6/1SkmMJxkuFwyje1lC4J6vHE6hYY:X9rs2rsfDFw3kAsAF6dSkfCdH1l5J6vd |
TLSH | T1AE22841BCA0A1BA19BC369A117D2E6416134A6271C777430389C92EC3F41829F2F72F6 |
insert-timestamp | 1648769986.4174492 |
source | RDS_2022.03.1_legacy.db |
Key | Value |
---|---|
FileName | ./usr/lib/python2.7/dist-packages/pbalign/tools/__init__.py |
FileSize | 1953 |
MD5 | C499C2A0BBB0204281C6D74A2C63B953 |
RDS:package_id | 184818 |
SHA-1 | 12C520B7BF0EBF322D58D0E7CACED0D8909891AF |
SHA-256 | C206FFCCFD8D6D995A53246BAC3AAD349020667F1F2C4CFCD01E9D6880EE89F9 |
SSDEEP | 48:2NO9rYJ2rYJ9ex6rtHjO4sMw5t32sWEtV1GtLiHeGAS:2g9rYJ2rYJM4tDFAt3S/pixL |
TLSH | T15E41A787528017B247E2479162EAFFC0B18A803D3F23BE0518ACF3845B6B52EE577595 |
insert-timestamp | 1648769986.3858578 |
source | RDS_2022.03.1_legacy.db |
Key | Value |
---|---|
FileName | ./usr/lib/python2.7/dist-packages/pbalign/options.py |
FileSize | 27728 |
MD5 | 5DA4F10D0752353A21F2ACAF2BF39E88 |
SHA-1 | 1663E1475C960E1CAC0C1E7530F4AB0095719FE8 |
SHA-256 | 13185C463C53FF7E99F8459CA9AA7532513C026CB256FB664AB22864A5C3FCE0 |
SSDEEP | 384:Nrs2rsfkkeaGn9neAxGA0vgnYuv5ZnFEGrHRr02QUGRaq:NxdkhGn9nbxGHvgnLv5zNoaq |
TLSH | T14BC2C702A54117E713C745F5A99B4A225A31A32B2DA33858709DC39C2F1D86FE2F37DD |
Key | Value |
---|---|
FileName | ./usr/lib/python2.7/dist-packages/pbalign/ccs.py |
FileSize | 898 |
MD5 | F8377DC73116D149B9A0A741B99B3D33 |
SHA-1 | 3AAB136D755708443FC3D91560E4D6D82E1DBDE6 |
SHA-256 | 74A9BCA47DF3513F8DE048BD87AAE952854896273704D685EFE29ACA501F100D |
SSDEEP | 24:1qoweWHmo1BepeS0gFptFrGUVJwlJ+0x7Hpwv:1jweWHh1gTwUVJwlJ+i7HA |
TLSH | T1A211CC057893A670D4C998BF6101B020E0E6E71B1ACA1910329ED3661FB26E5B36F70D |
Key | Value |
---|---|
FileName | ./usr/lib/python2.7/dist-packages/pbalign/alignservice/align.py |
FileSize | 9137 |
MD5 | 5B8648D4460460E8A05019E429568FE0 |
SHA-1 | 3AE19C849B9CB6D8E8E1233F88868D87D94DB385 |
SHA-256 | 9A66BF706F54DB43089641306F77ACB58D77AB859ED379C2A3F06631B616E210 |
SSDEEP | 192:X9rs2rsfDFw3kAj6Nn+u4rD39i+2S6uny6FFNANnGs:Nrs2rsfkkq8noNQSyc/Gf |
TLSH | T12512864B4A450EF283D795B32653B002292AD51B1DBB242138FD975C3F62629F3F2EE5 |
Key | Value |
---|---|
FileName | ./usr/lib/python2.7/dist-packages/pbalign/service.py |
FileSize | 3147 |
MD5 | 8AEC3525E3E5FBA7ABB7B9B0DF21BC4F |
RDS:package_id | 184818 |
SHA-1 | 3AEB651F4763E74DDFE84CC235BF3E2E12315DED |
SHA-256 | FC1CB3F152C2B79D776244E8C3DDBDD57C30A0858E72C3BE6423732C12F093C4 |
SSDEEP | 48:2NO9rYJ2rYJ9ex6rtHjO4sMw5t32sWEtV1GtLiHJMKxPOLp6SpLPeSphI:2g9rYJ2rYJM4tDFAt3S/pir6y |
TLSH | T10A51A58BDA84CFA22382866925537EC0730E501F2E3B68127DFDA2086F66D1EC43D569 |
insert-timestamp | 1648769986.4179726 |
source | RDS_2022.03.1_legacy.db |
Key | Value |
---|---|
FileName | ./usr/lib/python2.7/dist-packages/pbalign/bampostservice.py |
FileSize | 5679 |
MD5 | 42DAB09FEAAFF0E03DAC83DE91523B53 |
SHA-1 | 3E1CAC5978A2DA7EAE13A13B3E448E86BF770E80 |
SHA-256 | BE0394061ECC506979A697E530652F164BE960782EBDD0F496F045B3032DAF3D |
SSDEEP | 96:2g9rYJ2rYJM4tDFAt3S/pinz1bm0issvS0mnNDF4dqFq+QyW:X9rs2rsfDFw3kAz1S0TsYF44FzjW |
TLSH | T1DCC1202AA41459A35383409211A6A9D1F39F903B2E17D73C34FCE1006F59F29E5FBAE9 |
Key | Value |
---|---|
FileName | ./usr/lib/python2.7/dist-packages/pbalign/utils/__init__.py |
FileSize | 1906 |
MD5 | C63465CE73F91B8D8EEB816C0D313232 |
RDS:package_id | 184818 |
SHA-1 | 4DDCD936A3E56EEE7A2D112BE84792DFA206F03C |
SHA-256 | 96B74F95A7F65C37B48875807967A7A6A468F0D3670A511449DDEF91D3E78836 |
SSDEEP | 48:2NO9rYJ2rYJ9ex6rtHjO4sMw5t32sWEtV1GtLiHoI:2g9rYJ2rYJM4tDFAt3S/pij |
TLSH | T116419687024017B247E2578562EABFC4718A803D3F23BE0528ACB3809B6752EE537495 |
insert-timestamp | 1648769986.3406723 |
source | RDS_2022.03.1_legacy.db |
Key | Value |
---|---|
FileName | ./usr/lib/python2.7/dist-packages/pbalign/tools/extractUnmappedSubreads.py |
FileSize | 7281 |
MD5 | 2D0CE851CF508504C92B86BE6BC43A47 |
RDS:package_id | 184818 |
SHA-1 | 50D462807CE6A265D2A59E781D42012A5B8A2A18 |
SHA-256 | 251411DBB25EF24A33BF3FB2A7449955AF73BE30CF496C68F578754918E4F0AD |
SSDEEP | 96:UH8+dSKvbV1wUyZ9j92HTsC4f58sc9ozfXn0l8gCSJA:c7sCV1IgsC4usB0l77JA |
TLSH | T15DE15643C5AD6F5D924705BC024F75837B257A2F4E0C64B0BBBC93282F5927991A0EBC |
insert-timestamp | 1648769986.3863616 |
source | RDS_2022.03.1_legacy.db |
Key | Value |
---|---|
FileName | ./usr/lib/python2.7/dist-packages/pbalign/pbalignfiles.py |
FileSize | 10121 |
MD5 | 869BC759F405E6A28E067B0E6996CCC5 |
SHA-1 | 512431A46A55E4C38F74D26A11439ED6AE75F075 |
SHA-256 | D19C04C270AA0B758A57C714E48B28CBED47732FF67362E4A02F8CB781DDFB2E |
SSDEEP | 192:X9rs2rsfDFw3kA0wNGekuA2JM2xMNpdClGhnRQtTSNvNLN4NHObpT/j5rINvoMWQ:Nrs2rsfkkdWGTu3euMjdClGhR4UVJ+HP |
TLSH | T19F22220F4B024D65D723455522E7F18B6A1E606F1D771921B8FD928C3F02EE1B2E2EE5 |