Result for A2960FF062A60DAB731FA2C46DFBB5648F192320

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Graph view
Children (227)

Query result

Key Value
FileSize317836
MD556B01BB7967D51F28A513636559229BB
PackageDescriptionintegrated RNA-Seq read analysis CRAC is a tool to analyze High Throughput Sequencing (HTS) data in comparison to a reference genome. It is intended for transcriptomic and genomic sequencing reads. More precisely, with transcriptomic reads as input, it predicts point mutations, indels, splice junction, and chimeric RNAs (ie, non colinear splice junctions). CRAC can also output positions and nature of sequence error that it detects in the reads. CRAC uses a genome index. This index must be computed before running the read analysis. For this sake, use the command "crac-index" on your genome files. You can then process the reads using the command crac. See the man page of CRAC (help file) by typing "man crac". CRAC requires large amount of main memory on your computer. For processing against the Human genome, say 50 million reads of 100 nucleotide each, CRAC requires about 40 gigabytes of main memory. Check whether the system of your computing server is equipped with sufficient amount of memory before launching an analysis.
PackageMaintainerUbuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
PackageNamecrac
PackageSectionscience
PackageVersion2.5.0+dfsg-3
SHA-1A2960FF062A60DAB731FA2C46DFBB5648F192320
SHA-2569B35F224E738D5A716C40A9C8B4E5E7E7A153F2BE915DF0635EA0BDA0F686B1D
hashlookup:children-total227
hashlookup:trust50

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Children (Total: 227)

The searched file hash includes 227 children files known and seen by metalookup. A sample is included below:

Key Value
FileName./usr/share/doc/crac/examples/test_f/bug/bug-17749-genome.fa
FileSize1232
MD514C065ABD67D129666BBB81D80E8C9E2
SHA-10054DE3CB50B065A9DDC3C6B0EC8EFD7250E88B4
SHA-256E2DAEBAC134F280F9D111831F0F607A4E9E4B11999C5AF223DE532F311A67797
SSDEEP3:PxJ3rkQrfioiixvriTkHkikRkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkk7:JJkivriTRRSXUmT4ckduzLJRcai5Ul
TLSHT173219EFAD7F059CDD352018B081C13E18CE4616F4A03A71129E4132D0D64861E48B445
Key Value
FileName./usr/bin/crac-index
FileSize177048
MD5AE48E288C9A1A1F9C56890728872D64E
SHA-100657285E90FE61349265DD2DCCC24A7B101C779
SHA-25694D18A1EF4E69432483FC313F48166F34044120AB8C399D5DA9A7862F26C1433
SSDEEP3072:SS8D/ukgjAyP2pHhgcHz0/A8BAmD0dReGYcxDm5joFg2q7Q11e5ii73IwROnFKC+:QD/SEyP2pHpaAmqRbDm5joKDs18iRwR2
TLSHT11F045B03B69318B9C1C6C57687879657B93078C483323EAF22C89B302D56B359F6976B
Key Value
FileName./usr/share/doc/crac/examples/test_f/test_index.tap
FileSize1057
MD52A68854361FA9C415A176ABD36AAC78A
SHA-1018B0135C7BD571FEE5786D1D37E1A4992AC0AC5
SHA-2562800931982218BBD4D06D7E608276CA81198D787F8DE52C703296D761E68D94F
SSDEEP12:ZnbQQx/LlQc/rfBFAG3cZ/ucQTDlwzUEIxymEA7dRNxFJ2arxKi9bc1AYazMfd9a:dbQQpNZFDlImdXdKVnlJZAl
TLSHT1481146E98C805A3102AF3A30BF0A2421FE746378D14C21110E5BB6BC7E4DA4835C20FA
Key Value
FileName./usr/share/doc/crac/examples/test_f/bug/bug-18793.should_get
FileSize383
MD589730026C64E5C73CCFCF7CCA9A7CFC4
SHA-102067B1AB1D583551E2B833CD65869D20BAB953E
SHA-256D9D5747898B30F68F060ACB543ADDBA8D40193AE4C38FFBF2729E26A4832CC76
SSDEEP6:Vw+tn2MnC+nn9BKw+tnIkgrikno2EGw+tnIvQ1o2w+HGVar3f/n:uGnPYgrHucWHZaLn
TLSHT190E092A5C859303181E8150EBE27C97AE5FDB52473C513605C10EAE9C14FD5D70A5CA0
Key Value
FileName./usr/bin/crac
FileSize471736
MD59C3618B950EDFA507788FD76BFA0F79E
SHA-103521267F32C6A18884D8765EB388F17C845F707
SHA-256F07A37B4105C9F3250B8C32C32AFD6C10E12BC7E54CE8E60A4C9C881E390EC6A
SSDEEP12288:COXuH8ozHULhKPf3MQ3E0+aardlbtTEY+DB:CGqShc3M30fu
TLSHT151A43B07B69214BCC1D6C471866BD5639531BC9882623DBF718CE7302F62E315F6BBA2
Key Value
FileName./usr/share/doc/crac/examples/test_f/bug/bug-16581.should_get
FileSize496
MD5CAB4B11B640543B55CD6EBB154765D03
SHA-1038498A319DCF5E4E01D7BC764EFEBACF2309946
SHA-256C171B25457528E95939377C84C607A115AA6CC70084DD698FBFA1E1FBC2B3CA3
SSDEEP12:uRnx4ghWGvhWGWHAAz6VYtCDoMGnXXhIfU8n3V:ubFXvXYLz6VYADSn+fXl
TLSHT169F059F1095B36300BF0210F7B27DAFBDAFC663433C416609C009B9D884EA14E0A66A0
Key Value
FileName./usr/share/doc/crac/examples/test_f/index_genomes.sh.log
FileSize39
MD5EBDAC7A9CDFA377E882E0AC605D32978
SHA-104D151A357CE3865AFEFC578935B04AF07EEA18C
SHA-256527DEC56412A9CC311696DCA3F5808F16670614CDA78A6AB895EEC5DAEC0DF1A
SSDEEP3:52213S4MqdWf2:KqdY2
TLSH
Key Value
FileName./usr/share/doc/crac/examples/test_f/bug/bug-15649-2.sam
FileSize392
MD51A96AD0F5DFE798326A966D482247EE9
SHA-105A15B332770D73DDADA53A6F2D291EAF688E40C
SHA-2568B5600BA508B92631FDD5DAF6CFAAEFBA5490AEDFC46C63FB0E0E6871CD651C2
SSDEEP6:nC5YQVUKtKNP6U03rcOArCAwyCmRQoaLQArb6FKYOg8KjLsjG3BsWJMiqLQq3UVv:nC5YQV6UGcI2oAQGb6N82LagaoMNUIN2
TLSHT15BE0618A5D5B1CFCB1C45479745D6D3DEE385554BD041DB06D15E11141CD9D054CB16C
Key Value
FileName./usr/share/doc/crac/examples/test_f/cigar/consistency3.should_get
FileSize2808
MD560A0224B850B51CA86A9B6726DE6B239
SHA-106AB601A9E9DEC5B4183BCCBF91E05C1E878F5C2
SHA-2561B3D8C5DE2EA3CFC9EEA7078E9269B538565594A69E53A034847BF590191DA0E
SSDEEP48:0lN+zryxYx3xlN7BO7JRw0a0aSuJSL0nQ7uS:6N+a2txj7BO7QSIwuS
TLSHT1FD514C37A21A255EFAD2DD54F419E305EFF26468262BD78809C5EAC3480C84CA4DB0F9
Key Value
FileName./usr/share/doc/crac/examples/test_f/bug/bug-case-sensitive.tap
FileSize502
MD5FDC68B5C1983F2C2F34FB9460188E2B6
SHA-106C513AFF8BD3F495468C2D44CEA4A610B2AF202
SHA-256AE78901D7D7237B13A961A7539F519C3C66C23F320EB2D83F7D4D7352D66D8E5
SSDEEP6:SbOM7qwwJF/rFtEWD9xM7qwwJF/rFsyVM7qwwJF/rFvPdaLxM7qw4oWJF/rFtEW+:WO5L/IS5L/X5L/RixPL/IHPL/kPL/Rk
TLSHT193F05EBF2BDC173307A52210B909308F3715EEB49F0069B9927CF0092205DE496A35D3





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