| Key | Value |
|---|---|
| FileSize | 6967360 |
| MD5 | F72EEBFC57860BA9C49ACA791CE623C2 |
| PackageDescription | tools for early stage alignment file processing This package contains some tools for processing BAM files including . bamsormadup: parallel sorting and duplicate marking bamcollate2: reads BAM and writes BAM reordered such that alignment or collated by query name bammarkduplicates: reads BAM and writes BAM with duplicate alignments marked using the BAM flags field bammaskflags: reads BAM and writes BAM while masking (removing) bits from the flags column bamrecompress: reads BAM and writes BAM with a defined compression setting. This tool is capable of multi-threading. bamsort: reads BAM and writes BAM resorted by coordinates or query name bamtofastq: reads BAM and writes FastQ; output can be collated or uncollated by query name |
| PackageMaintainer | Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com> |
| PackageName | biobambam2 |
| PackageSection | science |
| PackageVersion | 2.0.95-1 |
| SHA-1 | A0C8C35FF0CB1266734A577AFD9F8D0186B75387 |
| SHA-256 | A53C1BEE9AA976E72EB18693443FDBE1CC9BD5941AF02CBD933B5817347CAB91 |
| hashlookup:children-total | 114 |
| hashlookup:trust | 50 |
The searched file hash includes 114 children files known and seen by metalookup. A sample is included below:
| Key | Value |
|---|---|
| FileName | ./usr/bin/bamsplit |
| FileSize | 288464 |
| MD5 | 6655898E3BA4C00D3358214D5437F22E |
| SHA-1 | 05E9E3FCBD55F69F998DA42A99E16F368C44D7D9 |
| SHA-256 | 89651F43EBE0422B716F184D4E3C7FA7281A4EE1B0E6A782D11520EA5DE46EA8 |
| SSDEEP | 6144:4p0ueMK2095t7xVZFtCl/yHS7m2fAojXjIXnmzgG:+S7zUdaeAyTIXn |
| TLSH | T187543906EA33F832F04351F5134B9BB204009E32945BD497F685DE5B78BA5E29B29773 |
| Key | Value |
|---|---|
| FileName | ./usr/bin/bamindex |
| FileSize | 337616 |
| MD5 | 12CE44910605BE132F8BE04FC4CD1139 |
| SHA-1 | 067B6BEC49259685C883B762DC79ED5050989306 |
| SHA-256 | 87764D85799931612BE07B0DC109A81CF53A99F82B4AD30C65E647EA978799A8 |
| SSDEEP | 6144:QNV7KA2xPLpk2AcpaVVYNPTAE6sGrO0f25XEE+W0QY0Lqz:vpBAUafYl0EIO0O5UPQf |
| TLSH | T194743B66E623FC32F08345F1234B97B30810A936944B84A7F781AE5BB4B55E2972D773 |
| Key | Value |
|---|---|
| FileName | ./usr/bin/bam12strip |
| FileSize | 431824 |
| MD5 | BC9EF7F6E2556AFE5B4A773E9671DABB |
| SHA-1 | 126CB61267159A433B1F8C19664201FC98CE21C5 |
| SHA-256 | 288F33A4A7BA14E55A9CA0EF53764217E2B2B3EB23BA8D732D80DCF77CC4F4AC |
| SSDEEP | 6144:gogDrQ1ocMKxcCcOwdJuNTD718WGAk3iK2Ng/qq73wPdphUnAnTC7rYihZ:ZcWLiJuNh8WIcK/vQpuAno |
| TLSH | T16B942916EA23F832F09341F1134B9BB30400AE36940B9497F685EE6FB5755E29B2D763 |
| Key | Value |
|---|---|
| FileName | ./usr/bin/bamfilterflags |
| FileSize | 534228 |
| MD5 | 6C3F6BBC66192EB5E8E553BCD551EDB5 |
| SHA-1 | 13A30F328D93F43DD2E9DF087BBB456ECCB4CDA1 |
| SHA-256 | A2157BBE6229DBF0D45B894A8BA52445257D2B305332021D3696B17323152F08 |
| SSDEEP | 6144:mEHWGSCORTCMkfCgUP7DB2CsU2t1pof8c5N0iEydxZWZSF/d8GD9R9c4wboQy/Sn:QuVeM7t/oH0i77ZX1c4wbKiohpyL |
| TLSH | T116B44B16EA33F832F08341F2134797B204406D35940B9497F7859E5BB5B95E2AB2EBB3 |
| Key | Value |
|---|---|
| FileName | ./usr/bin/bamauxsort |
| FileSize | 440016 |
| MD5 | C55E285133D7FC1F1800AAC24CA50E78 |
| SHA-1 | 1811CFE309D407190B8E3041714EA58280DCE170 |
| SHA-256 | 8EFAF01355775C4135765203EB6BD3A09B0D4B68A83085A550FB55B288D0C658 |
| SSDEEP | 6144:44RR1ocMK8cG4SuVIkAe/c/TBCGomCIilP2mgsBZTVLsLi1Uj5YYrIHmZ1nY+iDJ:m/H1eE/TAGti1/9sm12amnE |
| TLSH | T18F943B1BEA23F832F05341F1134B9BB304009E36941B9497F685EE6B75791E2A72D763 |
| Key | Value |
|---|---|
| FileName | ./usr/bin/bamrecompress |
| FileSize | 427732 |
| MD5 | 4DCBF7D1F2747ADC8F12F0186850788F |
| SHA-1 | 18AA40BBB78FF8A4A1380A977BBD70989CEB6633 |
| SHA-256 | F6FD85EAF36AFC7DD085439B1FD471CC93F5F4DD644EB2961CF76EF2A67E826E |
| SSDEEP | 6144:7ooK7kqlrpBm9ty74yr0od0CGgjvz7Ltuc7P/gYAkPZlQzPWzXqD0:Mm3yMyhd0CZvTtuiPbzXqY |
| TLSH | T171943A16EB23F832F04301F2134B97B31440A935940B9497F785EE6BB5B96E29729B73 |
| Key | Value |
|---|---|
| FileName | ./usr/share/man/man1/bamchecksort.1.gz |
| FileSize | 653 |
| MD5 | 38F0E9A258692F4719A26E9B9289DADF |
| SHA-1 | 1ADD28A41A9A6B92EF8AF29D56151835032C1077 |
| SHA-256 | 7A96445518E1E03E60ECB64D56EEBA46E174B3FD8C78558008FD2E417BB8FF82 |
| SSDEEP | 12:XFclNBUF0q1oBVJVF/ZEoy3HS6xKpiEK+4evygTNbO2ZKisBCDHG3qKq9iR:XFclkW7N2B55Emev7TNbOsK/CaqKYiR |
| TLSH | T111F023149B4093E985F9CFB4E501D9097AA797DA834CFA985190F11456C6AC433D0C84 |
| Key | Value |
|---|---|
| FileName | ./usr/bin/bamscrapcount |
| FileSize | 743124 |
| MD5 | 2728A8EDA01A52CCAD042D4384FE261B |
| SHA-1 | 1E59AECD828C528070DD730766A44DCC1C143E12 |
| SHA-256 | 71F0E735CBAB412FAFF3F43C7E959671E38D4E300D14A9CA1485DB3EDF470A4C |
| SSDEEP | 12288:IcgUUX1RvBY8G2BVdah9SrMf4J9CIBHBKcxYuob0L6sGTXwPHzVaw:Ic3UFRvBYrc+hUrMf47CI1YcxYuob0Lr |
| TLSH | T1E7F46C16D636F832F04301F113479BB60540AD35805BD0A7F68A9E8FB57A5F2AB2E763 |
| Key | Value |
|---|---|
| FileName | ./usr/share/man/man1/bammerge.1.gz |
| FileSize | 1453 |
| MD5 | D860932900A7A3AAF7CA564AB85F249F |
| SHA-1 | 1E9DFB3EA213BB8C05C451EC5B022B9BE2B9638F |
| SHA-256 | 05AF51B36ECE5FA49D1EBBE88D7EA7EA3E2FD80F1C782FF4C5AC1B53143E96C7 |
| SSDEEP | 24:XiLQBMJY7joJA/l+RtO47lcR389vdBgYPIJyRh9wOALGYWoAZ1uLJJU97zpA:X7MJgj/lGkWlcVWdBgcIEdIDLAD6U9pA |
| TLSH | T1DA311B4F6F75873EFD03DDC1559653E3AF6A4CD032554600315048A8823FA1E31AE4C0 |
| Key | Value |
|---|---|
| FileName | ./usr/bin/bamadapterfind |
| FileSize | 1091284 |
| MD5 | BC36D04BA322E309D4D837DB55567B50 |
| SHA-1 | 1EAF74B29CBB70C653A572E9C050942B50B5275E |
| SHA-256 | E235B1B2EAAE575BAE16EA3AD4F232386F031183484EC4F0EEB7B3D9D4ABC34A |
| SSDEEP | 24576:ZJmgVyRmp6TSQeRql95sTO4ZUcQxJgDnhcEcuob0LdUGtHn9/PO:/fwRmpoeR05sLHhcEcuob0LdUGtHn9 |
| TLSH | T1DE355B16DA73F832F04301F11347ABB704416935804B9497F686AE8EB5BA5F2A72E773 |