| Key | Value |
|---|---|
| FileSize | 6216528 |
| MD5 | A814914B9F244A85E3F43BE388EC6745 |
| PackageDescription | tools for early stage alignment file processing This package contains some tools for processing BAM files including . bamsormadup: parallel sorting and duplicate marking bamcollate2: reads BAM and writes BAM reordered such that alignment or collated by query name bammarkduplicates: reads BAM and writes BAM with duplicate alignments marked using the BAM flags field bammaskflags: reads BAM and writes BAM while masking (removing) bits from the flags column bamrecompress: reads BAM and writes BAM with a defined compression setting. This tool is capable of multi-threading. bamsort: reads BAM and writes BAM resorted by coordinates or query name bamtofastq: reads BAM and writes FastQ; output can be collated or uncollated by query name |
| PackageMaintainer | Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com> |
| PackageName | biobambam2 |
| PackageSection | science |
| PackageVersion | 2.0.95-1 |
| SHA-1 | 7AC0BEA140E22180609739D3BB75FB652FE330AC |
| SHA-256 | A0E550A4513E3F075D0C03B7688B9651EA735E51FAD4505C541B5FF745DA899B |
| hashlookup:children-total | 114 |
| hashlookup:trust | 50 |
The searched file hash includes 114 children files known and seen by metalookup. A sample is included below:
| Key | Value |
|---|---|
| FileName | ./usr/bin/fastqtobam |
| FileSize | 395640 |
| MD5 | D37581E0664AAF72E6FE97BF1D2CD097 |
| SHA-1 | 056774CEDB4DF51319FA50841E62F9CF5F1EDD97 |
| SHA-256 | 817FA340F82ABE4600B32D083BEDC32767550225E41238E13355BF3378F27C51 |
| SSDEEP | 6144:jEsx7WbxUy9/2FQAZExzlYVrx1VOKBPwHqnebjpDkDH11xmuIaUb5fGpzO4b:4MzQAZoSwKnW9wrxm1ZG |
| TLSH | T1DA84E622311EB792EF427C37979FB61433527D4A0D244542FA41D31BEFAA30A4B6AE4D |
| Key | Value |
|---|---|
| FileName | ./usr/bin/bam12split |
| FileSize | 461200 |
| MD5 | 6DD33CBD72E3A199954FF8A03846AE86 |
| SHA-1 | 088F72967A845DAFC8B5EE815CF63ECE2198E572 |
| SHA-256 | FCEC12E44B03BAF98FAFBA60B67460DE33C3038B60861622AC1E0672FE469DB3 |
| SSDEEP | 6144:PFP4bchVP9DRjq4Im6tF+CyqmaurBpFHcHkCaIHd49a8epo58dqpsDbzzT2Cd:PrTRWm6tFyq+rBpyzxd4C41psl |
| TLSH | T1D3A40926751EBB51DF477C3B478EB91432827D4A0E284542BE41830FEF6A6168B2FE4D |
| Key | Value |
|---|---|
| FileName | ./usr/bin/bamalignfrac |
| FileSize | 789096 |
| MD5 | 829BC0A90FBE7338E5DB6D6526409351 |
| SHA-1 | 0CF3B81297066F8E3F13EF809C9A398686E9E033 |
| SHA-256 | 02A57B7E42384CB1EAAFA46EB8D62BACD0CABDE0507611D3D01D722E7DEE2CFF |
| SSDEEP | 12288:ax4nl/IP1n5jCvciT9GP5B8ptfi31esfQnDDGJtCwmrmq:ax4nlljtfi31esfQnDDGJIwm |
| TLSH | T107F41B26715EBA51DF427D3B878DB95032927D4A0D280552BE41830FFF6E21B8B2EE4D |
| Key | Value |
|---|---|
| FileName | ./usr/bin/bam12auxmerge |
| FileSize | 526736 |
| MD5 | B884E7BD4AB34CA4CFEE73509651A1B4 |
| SHA-1 | 12D304AB0C69CCC9F3355A232F485609350FEE3C |
| SHA-256 | 17C325C3858F36E60FA8DB198CA5363B6E229495BB21E609F1994DF1FA1E0C35 |
| SSDEEP | 6144:uyT24bjhW40moYdAX4NdItzt0ewi2do7QZwN0eTHH9FbZLjDW279T8jvDbMEVMir:uyfeYdAUdCTwdS7QZjeJXHFQMiDqrpl |
| TLSH | T144B41B23755EBB51DF437C3B478EBA2532427D4A0E254542BE41830FEF6A6068B2EE4D |
| Key | Value |
|---|---|
| FileName | ./usr/share/man/man1/bamchecksort.1.gz |
| FileSize | 653 |
| MD5 | 38F0E9A258692F4719A26E9B9289DADF |
| SHA-1 | 1ADD28A41A9A6B92EF8AF29D56151835032C1077 |
| SHA-256 | 7A96445518E1E03E60ECB64D56EEBA46E174B3FD8C78558008FD2E417BB8FF82 |
| SSDEEP | 12:XFclNBUF0q1oBVJVF/ZEoy3HS6xKpiEK+4evygTNbO2ZKisBCDHG3qKq9iR:XFclkW7N2B55Emev7TNbOsK/CaqKYiR |
| TLSH | T111F023149B4093E985F9CFB4E501D9097AA797DA834CFA985190F11456C6AC433D0C84 |
| Key | Value |
|---|---|
| FileName | ./usr/share/man/man1/bammerge.1.gz |
| FileSize | 1453 |
| MD5 | D860932900A7A3AAF7CA564AB85F249F |
| SHA-1 | 1E9DFB3EA213BB8C05C451EC5B022B9BE2B9638F |
| SHA-256 | 05AF51B36ECE5FA49D1EBBE88D7EA7EA3E2FD80F1C782FF4C5AC1B53143E96C7 |
| SSDEEP | 24:XiLQBMJY7joJA/l+RtO47lcR389vdBgYPIJyRh9wOALGYWoAZ1uLJJU97zpA:X7MJgj/lGkWlcVWdBgcIEdIDLAD6U9pA |
| TLSH | T1DA311B4F6F75873EFD03DDC1559653E3AF6A4CD032554600315048A8823FA1E31AE4C0 |
| Key | Value |
|---|---|
| FileName | ./usr/share/man/man1/bamfilterheader2.1.gz |
| FileSize | 1194 |
| MD5 | 449AFE4688B7F42F7A497906C05C5664 |
| SHA-1 | 1F50C010DC15F053492393EAD03C09ADCB4C3599 |
| SHA-256 | B5661483DC534CA9B8E09FA4C3F9629791DE891A4B2E495F99FDA7D1A229BA55 |
| SSDEEP | 24:XvHC4O1DLo9P7z5oemjmGdFsVzDUUtLsWYCZIp06jedOYsz:XxO1/o9TzSLmGTsVzDUUtYC20pOYsz |
| TLSH | T156210A9040A51949BC2DCC1FAE53BC8238421B8D3344061D48C135361192AE43BDF915 |
| Key | Value |
|---|---|
| FileName | ./usr/share/man/man1/bamadapterclip.1.gz |
| FileSize | 1215 |
| MD5 | CDFED4AF34BD96828DE5BAE7554B1FEF |
| SHA-1 | 2154638D2F717251D78F035429599C6921EB0C06 |
| SHA-256 | 711890CD1063626E6E2C1C1FDEBBC3383AC610A59ED3650AB6002DCDB5E0C4BF |
| SSDEEP | 24:X6DBHTKGiELcFx58+N8U3dIPgVm1INgQNsf/ndEuTibqasm7O:XUBdirJN8YGoVo5jf/ndEu4iIO |
| TLSH | T17721B4570CF4AE4E8168232FAD167415BE6B2A370E39C0636150499A66AA0450D3F636 |
| Key | Value |
|---|---|
| FileName | ./usr/share/man/man1/bammarkduplicatesopt.1.gz |
| FileSize | 2734 |
| MD5 | EAD349449441D33BFEEF8877BB47E653 |
| SHA-1 | 229126724050F7B72F9F55FA639E544C2E39A34A |
| SHA-256 | CEDAE4AE2102C1D5F6C0A7751259C84B912CFBA48C00CB2089BD35465A987493 |
| SSDEEP | 48:XLHpyL1skv7MPiImCxzm5VFuGVCE4B0ewGCrApIUwsBjZWbwC4eYqVTsvO+JdcwA:bHc667ATzQVHIbwGCqwhwqRsvDJdcwA |
| TLSH | T15F514B80FE206C9288A1526378DAC9B41E09AACB8D425F5095D0E2F7F9584DF8DCC8A1 |
| Key | Value |
|---|---|
| FileName | ./usr/share/man/man1/normalisefasta.1.gz |
| FileSize | 1071 |
| MD5 | 5618EBC8F340C4316DAC8A076DB6A22D |
| SHA-1 | 22CA96F146CA91EDFE28E095183A62DA0F42A40D |
| SHA-256 | 9F00B02E961DC7C42DAB0110010D63DAC6A68328DDDA6B21C10A9091A955D2ED |
| SSDEEP | 24:XiVtKfQawvsitlJl0ycXyNXi/VwQjsikX3YRji9I5n2/pn:XiVturwNLLRBi/2lxnYRjWI2 |
| TLSH | T14111B6A163E41818272B8B798CA0B701ABC8FBE41B111E4830894982DAFA726F633403 |