Result for 7480D9C0F5CFF91908DFB3A13D271BC74644AA4C

Search result
Graph view
Children (228)

Query result

Key Value
FileSize316712
MD5E3EEFE20C4EA81C9ECCFA35820DB11C5
PackageDescriptionintegrated RNA-Seq read analysis CRAC is a tool to analyze High Throughput Sequencing (HTS) data in comparison to a reference genome. It is intended for transcriptomic and genomic sequencing reads. More precisely, with transcriptomic reads as input, it predicts point mutations, indels, splice junction, and chimeric RNAs (ie, non colinear splice junctions). CRAC can also output positions and nature of sequence error that it detects in the reads. CRAC uses a genome index. This index must be computed before running the read analysis. For this sake, use the command "crac-index" on your genome files. You can then process the reads using the command crac. See the man page of CRAC (help file) by typing "man crac". CRAC requires large amount of main memory on your computer. For processing against the Human genome, say 50 million reads of 100 nucleotide each, CRAC requires about 40 gigabytes of main memory. Check whether the system of your computing server is equipped with sufficient amount of memory before launching an analysis.
PackageMaintainerDebian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
PackageNamecrac
PackageSectionscience
PackageVersion2.5.0+dfsg-3
SHA-17480D9C0F5CFF91908DFB3A13D271BC74644AA4C
SHA-256519E27309897F87906BB85F68D8B8D0BC73115A4E58711683E9DC54267246C38
hashlookup:children-total228
hashlookup:trust50

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Children (Total: 228)

The searched file hash includes 228 children files known and seen by metalookup. A sample is included below:

Key Value
FileName./usr/share/doc/crac/examples/test_f/bug/bug-17749-genome.fa
FileSize1232
MD514C065ABD67D129666BBB81D80E8C9E2
SHA-10054DE3CB50B065A9DDC3C6B0EC8EFD7250E88B4
SHA-256E2DAEBAC134F280F9D111831F0F607A4E9E4B11999C5AF223DE532F311A67797
SSDEEP3:PxJ3rkQrfioiixvriTkHkikRkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkk7:JJkivriTRRSXUmT4ckduzLJRcai5Ul
TLSHT173219EFAD7F059CDD352018B081C13E18CE4616F4A03A71129E4132D0D64861E48B445
Key Value
FileName./usr/share/doc/crac/examples/test_f/bug/bug-18793.sam
FileSize3485
MD592C08FB654D6CEC517C7017AADDFA961
SHA-10105138ADD5D878834F276E282629341F8A7FAC2
SHA-2563A73A29EE8427BF028F1990DA052DBC0E11829A5E3FA939E8C31E62152055DAD
SSDEEP48:SDQ0UY2FJzTVoo5bzF5puNlAsYTe6tEf9UY2FJzTVoo5bzF5puNlMsYTe6tEK8iV:dk2FNgNa0OE2FNgNi0OiJ2FNgg0OsK
TLSHT1857169B4AEAA155B645007EB2C5E379E4AC8E114F2153641FF358E1C5D389D3B0BF8D8
Key Value
FileName./usr/share/doc/crac/examples/test_f/bug/bug-18793.should_get
FileSize383
MD589730026C64E5C73CCFCF7CCA9A7CFC4
SHA-102067B1AB1D583551E2B833CD65869D20BAB953E
SHA-256D9D5747898B30F68F060ACB543ADDBA8D40193AE4C38FFBF2729E26A4832CC76
SSDEEP6:Vw+tn2MnC+nn9BKw+tnIkgrikno2EGw+tnIvQ1o2w+HGVar3f/n:uGnPYgrHucWHZaLn
TLSHT190E092A5C859303181E8150EBE27C97AE5FDB52473C513605C10EAE9C14FD5D70A5CA0
Key Value
FileName./usr/share/doc/crac/examples/test_f/bug/bug-18524.sam
FileSize3945
MD5041EC614732B3DD8B71DD3982371B15E
SHA-10247A853FD8AA943AD7A73D7B2155B6247A5AD6D
SHA-2568DDBBCB6C9CF1D870D7BBA426AAC7A4EFFB1D7052DEBCC2EC879D2687111DB37
SSDEEP96:dVDb2F+xNE2F+xN72F+8RwOfib2F+xNE2F+xN72F+8RwOfu:bZwoGwou
TLSHT10C8137B81E914946242417E7786F368E56C88605F1983983FF39CF2C9D746A3E47F8E8
Key Value
FileName./usr/share/doc/crac/examples/test_f/bug/bug-16581.should_get
FileSize496
MD5CAB4B11B640543B55CD6EBB154765D03
SHA-1038498A319DCF5E4E01D7BC764EFEBACF2309946
SHA-256C171B25457528E95939377C84C607A115AA6CC70084DD698FBFA1E1FBC2B3CA3
SSDEEP12:uRnx4ghWGvhWGWHAAz6VYtCDoMGnXXhIfU8n3V:ubFXvXYLz6VYADSn+fXl
TLSHT169F059F1095B36300BF0210F7B27DAFBDAFC663433C416609C009B9D884EA14E0A66A0
Key Value
FileName./usr/share/doc/crac/examples/test_f/splices_adjust/splice.sam
FileSize3460
MD563688168C8B844C035D861965AFE471B
SHA-103BEEA7C6128901F16A0602F50C8F434662B4794
SHA-256D09D291CF1A040FB05E19A02E7BB0398C7E72E676D2A5BA1908BA87A86ACDE69
SSDEEP48:SDOX6J2F7V9p0FiuNlLnfoJ2F7V9p0FiuNlLG6J2F7V9p0FiuNlL12e+J2F7V9pU:Ve2F+xNl02F+xNb2F+xNlIV2F+xNau
TLSHT10961BCB85EA51886606907A77C2E229E5AC8C106B1E53552FF35CF1C5E346A7C0BFCEC
Key Value
FileName./usr/share/doc/crac/examples/test_f/bug/bug-17749.sam
FileSize1512
MD5820E04986F0C0D7386AF47B945023325
SHA-104209FBD192DC22F7D68F7B3483AE1694A56CB69
SHA-25661D4D94E85DD58F7501D9B830B0EF68F69C8114EDAA12715298FA8B2A161F40B
SSDEEP24:SDQWtLntn5jckqeCCDqy5jckqeCCDq4GlkiEFn8CUqMIGlkiEFn8CUqM6:SDQ65jckqefqy5jckqefq5kiEcqMJkiK
TLSHT1343171BC6EB5CEF8F0D4080F1979B66DD4BC601EBE469590E4A5D22D4C986C1E0CF844
Key Value
FileName./usr/share/doc/crac/examples/test_f/index_genomes.sh.log
FileSize39
MD5EBDAC7A9CDFA377E882E0AC605D32978
SHA-104D151A357CE3865AFEFC578935B04AF07EEA18C
SHA-256527DEC56412A9CC311696DCA3F5808F16670614CDA78A6AB895EEC5DAEC0DF1A
SSDEEP3:52213S4MqdWf2:KqdY2
TLSH
Key Value
FileName./usr/bin/crac-index
FileSize177048
MD52FE85EA17258549C15DE25D0F462B38A
SHA-1053BABACA514AEAA7337F16EC0888523237E6D7B
SHA-2564DDB1108DEB81FA679F1ABEA6DEAD13E7DEC2E31B86D4E99691796CBEC8B44B2
SSDEEP3072:SD/gVOKuE9fyP2pHhg9HO/AdWmDucRPdIrBO+U188jAgxYsf7v1iC93jrFenFKC4:SD/yuwfyP2pHocAdjRleU188jfxzfhiT
TLSHT1FE045B03F69604BDC1C6C576878B9656BA3078C483323ABF22C89B302D56F355F6976B
Key Value
FileName./usr/share/doc/crac/examples/test_f/cigar/consistency3.should_get
FileSize2808
MD560A0224B850B51CA86A9B6726DE6B239
SHA-106AB601A9E9DEC5B4183BCCBF91E05C1E878F5C2
SHA-2561B3D8C5DE2EA3CFC9EEA7078E9269B538565594A69E53A034847BF590191DA0E
SSDEEP48:0lN+zryxYx3xlN7BO7JRw0a0aSuJSL0nQ7uS:6N+a2txj7BO7QSIwuS
TLSHT1FD514C37A21A255EFAD2DD54F419E305EFF26468262BD78809C5EAC3480C84CA4DB0F9





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