Result for 6F2F01C50E0FECE615BE9A5EFDABEBD889B3D79C

Query result

Key Value
FileSize204824
MD549B89622505285B10AEFF96EB37D615D
PackageDescriptionfunctions broadly useful for viral amplicon-based sequencing iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing. Additional tools for metagenomic sequencing are actively being incorporated into iVar. While each of these functions can be accomplished using existing tools, iVar contains an intersection of functionality from multiple tools that are required to call iSNVs and consensus sequences from viral sequencing data across multiple replicates. iVar provided the following functions: . 1. trimming of primers and low-quality bases, 2. consensus calling, 3. variant calling - both iSNVs and insertions/deletions, and 4. identifying mismatches to primer sequences and excluding the corresponding reads from alignment files.
PackageMaintainerUbuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
PackageNameivar
PackageSectionscience
PackageVersion1.2.2+dfsg-3
SHA-16F2F01C50E0FECE615BE9A5EFDABEBD889B3D79C
SHA-25663D007F1C1796854B457F7989AA8FF825C2A498F5A6E3F94B8D24E3BA3330E3A
hashlookup:children-total43
hashlookup:trust50

Network graph view

Children (Total: 43)

The searched file hash includes 43 children files known and seen by metalookup. A sample is included below:

Key Value
FileName./usr/share/doc/ivar/COOKBOOK.md
FileSize1592
MD504B412F133D6D7882CFB90516EC739E7
SHA-1069A5FED16B044E6CB60AE589AD21C2341DBB0F7
SHA-256706CDD31676834A080BB71BF8E7E2C69314319CA6AE600141E81153CA740FEC9
SSDEEP24:+FP0wV6xk+xUQ80Ha+G0HhMm8uh1k8G0fPWFIrMGFj8+c6fGOt04hxHJu1DDv+hf:0fM6+t55JuIY+TZfpE+hDMeepE+K
TLSHT1BD3158FB9C1D09C70F8125D451D53269C217967EF8D8842AC0F46F04644476B3AF77A9
Key Value
FileName./usr/share/doc/ivar/examples/data/test.gap.sorted.bam.bai
FileSize96
MD545D4E161F99A3366FDE26E5F8EA11B7A
SHA-10CFA671086A51F2FEDC9F622739C73BDAB2F5B47
SHA-256006089F2B633D67CA66AE112B7A5D40716B9316B5DC81A37D89FF0D189ECAB44
SSDEEP3:ltPllzltlz2lVHll72l5ll+lz:bPr1KS2
TLSH
Key Value
FileName./usr/share/doc/ivar/examples/data/pair_information.tsv
FileSize92
MD553B32A6D6985AADBE5F127B0F5ED6062
SHA-11B1D623CCB9638414C1263A6E318BFEC910F6F04
SHA-256D14182B17CBA85AAE1CE86A3BA36135BF3E0B716563096C1FC832C558F9A1529
SSDEEP3:j6Xksitxv+65rpXr3xp+65YwmYciD:j4WjrZrhpjDme
TLSHT124B00128E3224334207421FC83AEC84732CBEC335140808082F910C00DB80830CC2A03
Key Value
FileName./usr/share/doc/ivar/examples/ref/out-variants.tsv
FileSize515739
MD52041BD9A49D1EE092E196ACE01EC3EB1
SHA-11CFBA193F27680632B180F32DDDC4010E0BE65F2
SHA-256B0CFAD5F29914BDF90BA632A1B32F4700A537C255FCBDFDCD8360AC3F779A744
SSDEEP3072:O5Ya4eP0Nh/sQjdQ1pecN7zogEw1vYd5ahmAInw9Oa:L2aJwe0okhmWB
TLSHT18AB42BCB3C911697A88556939CF7127C2D1FCA3AFB590C05D89096A0AEFDF44A9309CF
Key Value
FileName./usr/share/doc/ivar/examples/data/test.trimmed.sorted.bam.bai
FileSize96
MD53E94952A4D11306FA9807826E8AA7139
SHA-11E33EF57DCD04A9CAD2F85F6139D41141D9A503E
SHA-256AA2CB9013D36BFBDEB7FF1C6A99F734CD73E9EF7D215D917FDD085ED6E270103
SSDEEP3:ltPllzltl0MlvHllMMlIlUl0:bPr1HpO8
TLSH
Key Value
FileName./usr/share/doc/ivar/examples/ref/out-trim2.sam
FileSize828
MD512F30C803FE86675978F66EB422B685A
SHA-11F1A6383E82F430C89602F570630695348CDF2E4
SHA-2563D04BB3C7ACE5FBAA291E166510DBBFA86D470E49CEBB507B8E87A4B1D8A5E86
SSDEEP24:kaBediIHEmHyxQLUZjytZvsZaqtDdXPoRUwhxmMizvsB:ks6VknQC+ZUZ/B/shx3izUB
TLSHT13701C271BBD5AE75A1D20643479F3752CCC168BD4FCFC921276116152D74152F076513
Key Value
FileName./usr/share/doc/ivar/examples/data/test.gap.sorted.mpileup
FileSize6002
MD578DE089598FFD727ED95C1525FCB6498
SHA-12F1DF2A5A9961155B029D50298304ADB23CEEA3F
SHA-256A5509BFF62961FE6F47B7DD7A48EF0F6E2EDBB9722AC3B738D74546892CE08E3
SSDEEP96:k6g8ZsGIbLHRWh0rmiTfdPsdL3oJGhgQsMtBvjFpfYOT/8gb991iyFnAwumf2:k6g6wT6dL4SgQsMtBbffZ91iyFnAwu+2
TLSHT187C1D02239D36741923C924913E4BF8D668BF699607B4F4C7BC8F2D5FA02FB04694663
Key Value
FileName./usr/share/doc/xlsx2csv/README.test
FileSize278
MD52DE4573BC735E689F789D7662AB0497B
SHA-134200C528591A6F25552E67122DAA479F2C54753
SHA-256661779DB6A77C9045E836BDFEBA7DFEC1A17CAF079E40B27E6E0C22242CB4312
SSDEEP3:OpKL62NMGlGmIRCvH7xd7777777777777777777777777777777777777TjvvlGr:OpK+2NHlGq7vlGkwyAK9EOMfyGYL6f
TLSHT1C8D0223712C688063100CC8E19898131E41DB02E723800C02928391C97CC8324943CB8
Key Value
FileName./usr/share/doc/ivar/examples/data/test.sorted.bam.bai
FileSize96
MD5D2F49628DEC9BEFCA95DF0A58DC3EF5C
SHA-13910EF2196B719A2800ED7CFE1734847B45F5853
SHA-256DAD6CFDB517ED15BE02DC7310853F50AF78AD9F9603C4B9C2131E294215DB4C6
SSDEEP3:ltPllzltlLlv/lv3lHllTlv/ljl1+lLl:bPr1Y
TLSH
Key Value
FileName./usr/share/doc/ivar/examples/data/test.sim.merged.sorted.bam
FileSize822
MD5510957818C8FE0E3F2E8325A5BB77C6C
SHA-141FF7B2B57D11D281989B4A789CA6C233DDED158
SHA-256C482C60C8304EB09DACEB0A1CC36ABC86924FFEE625EC89A55FD03B227A95DFC
SSDEEP24:XmpQL8kUaSi+jkrdjxaWM5VjaebFyUYXKncHVF4jld:XmpQL8CN+jkRjxaWMPaeboUI1S
TLSHT15B0186F1F2469559EF81C334A7B96C47FA20512EAF15F306058399184A7468808C00BB