Result for 557E9297DCDA209B071729C87A8B2B0B63D1A512

Query result

Key Value
FileSize204928
MD59DC6788965A00A70D09692F8B7A72FB4
PackageDescriptionmanage nucleotide sequencing read data To facilitate the multiple phases of the dazzler assembler, all the read data is organized into what is effectively a database of the reads and their meta-information. The design goals for this data base are as follows: * The database stores the source Pacbio read information in such a way that it can re-create the original input data, thus permitting a user to remove the (effectively redundant) source files. This avoids duplicating the same data, once in the source file and once in the database. * The data base can be built up incrementally, that is new sequence data can be added to the data base over time. * The data base flexibly allows one to store any meta-data desired for reads. This is accomplished with the concept of *tracks* that implementors can add as they need them. * The data is held in a compressed form equivalent to the .dexta and .dexqv files of the data extraction module. Both the .fasta and .quiva information for each read is held in the data base and can be recreated from it. The .quiva information can be added separately and later on if desired. * To facilitate job parallel, cluster operation of the phases of the assembler, the database has a concept of a *current partitioning* in which all the reads that are over a given length and optionally unique to a well, are divided up into *blocks* containing roughly a given number of bases, except possibly the last block which may have a short count. Often programs can be run on blocks or pairs of blocks and each such job is reasonably well balanced as the blocks are all the same size. One must be careful about changing the partition during an assembly as doing so can void the structural validity of any interim block-based results.
PackageMaintainerDebian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
PackageNamedazzdb
PackageSectionscience
PackageVersion1.0+git20201103.8d98c37-1
SHA-1557E9297DCDA209B071729C87A8B2B0B63D1A512
SHA-256B30B3E39C57555E63F7E7BEF56FCF4279BA67152A1C91B0573A14F3AD39A9A1C
hashlookup:children-total29
hashlookup:trust50

Network graph view

Children (Total: 29)

The searched file hash includes 29 children files known and seen by metalookup. A sample is included below:

Key Value
FileName./usr/share/doc/dazzdb/run-unit-test
FileSize1815
MD5B54445E1C7EFCE1159695C03F58295CD
SHA-106A6DE5EA11D108D04FBB7726B9FBDDAD8EEABD2
SHA-256809848D275F25D72200FA9EB3EDFB3F6D81B602C7231DF713A1DE42D61EE1191
SSDEEP48:U9143HOgCnv9AXT7XREfDLgKrGHr1IStq:M43g+Drq0IE1Hq
TLSHT1C93112773D6573608E4E1168544F52A8D858F0BBC3F28D400FAFEAB814515B1785B268
Key Value
FileName./usr/bin/DBwipe
FileSize79976
MD5307E1E9FC25FDBA274ED0DF4D50DC1AE
SHA-11D2929B5E555942BF1C8E20CFD11ABDA1DFAD701
SHA-256F2030E18F6B72CE0AC139B3D01FE53708CC42EE897E1777A74DAA1CD7EB5694B
SSDEEP1536:rVQRoK6N0Z8LAuJWLJGO/Hff5icb+z2AulFXmNZahYto:qRoKwIF9T5iPqXmvH
TLSHT1B773F89B6632C5EAD1713B73825EABB3932336381BCB0F1C9F5EC70154F62415A14AB6
Key Value
FileName./usr/bin/DBsplit
FileSize84072
MD53FAFFB8BFFCE4615617EC0E47A2E347C
SHA-11DF8699681F735143545500AFCB5475AD1740CD0
SHA-256A622436527D68F72C013FB07BFDFDC86308CAB4612E42634063602D76871B918
SSDEEP1536:ucpn2wv0F6mR0l81Av4U7ELQ664i8/3RzsEc28ZsoAwehHWX:ue2zFL+/wak3RA3Kxh2
TLSHT10183F79B6632C9EAD5713B73825AABB3932335391BCB0F1CEF5EC70154E72044A14A76
Key Value
FileName./usr/bin/DB2fasta
FileSize79976
MD535ED0EF85854A9342C9DFA6EB36F7C82
SHA-1246DC302B1BF84FDC69409D4B96679D20D1E7987
SHA-256C287E2F58110820BBAD36CEC10B1FA1B4DBB9C327F300D3D94B47518B02AB445
SSDEEP1536:Lj7l1+66Q0U8aAsPZlqs9CFeiJ4N0N2z/KgRvg8x1gY:/P+6dMSQTJ4N+obRvgm1
TLSHT10C73F79B5632C9EAD5713B73C25EABB3932335391BCB4F1CAF4EC70144E26015A14AB6
Key Value
FileName./usr/bin/DBdump
FileSize92264
MD5512168565BB8CCA4E1D66837D3F56506
SHA-1283B318BB52118CA825E66613EFD8E12E4C92DCC
SHA-2561CA76A89F6D5185ED248790B243AA87FB335CD42A6E2F635BCE3D669CDFCE526
SSDEEP1536:8P7Agezh6A0q48uAYei7ez8EbNP60ygLv5SGX205UrwZhM0R7D:80BzhxjASzlNhygLvhXarwDMA
TLSHT1DB93189B6632C9EAD4713B33825EABB3936325391BCB1F5CAF4DC70144F26458B04A76
Key Value
FileName./usr/share/doc/ncbi-epcr/README.test
FileSize278
MD52DE4573BC735E689F789D7662AB0497B
SHA-134200C528591A6F25552E67122DAA479F2C54753
SHA-256661779DB6A77C9045E836BDFEBA7DFEC1A17CAF079E40B27E6E0C22242CB4312
SSDEEP3:OpKL62NMGlGmIRCvH7xd7777777777777777777777777777777777777TjvvlGr:OpK+2NHlGq7vlGkwyAK9EOMfyGYL6f
TLSHT1C8D0223712C688063100CC8E19898131E41DB02E723800C02928391C97CC8324943CB8
Key Value
FileName./usr/bin/DAM2fasta
FileSize84072
MD52BCE97B76FE41EBB21143D1B34E984CC
SHA-142ACA092C495F008792D1E6911FE0ED75457382C
SHA-256C02C6C786A810DC0C7A18B977CC143EA39ECE19ED4C431576F93900FF7EAC36C
SSDEEP1536:AUpLo73R76V0Q8ZAKQq/UexmdigAYEkc2026gPGw5sYRoqoezJls:Az3R7AZE82/ksSpsYRoNql
TLSHT10D83F89B6632C9EAD5B13B73825FABB3932335391BC70E1CAF5DC70144E76014A14AB6
Key Value
FileName./usr/bin/rangen
FileSize10320
MD5BD48F277D0F4EB68AB6E760EA7B81360
SHA-156914E90019E4958CE447F5DB58ED09103DB65D0
SHA-25645D08E951664CEA126507713E223A1A7A8B4C2B408586630CC1E1D95DDB2C479
SSDEEP96:VMxwwkKGB+BtfAcFhD4j4dlyB7E7t96TlEKnPqx6RErgyTes80zgoAVyL0w54t:1fwXosSslW7OwTlVPqlgyTeC8oL4
TLSHT1D422301B9735C6BBC0B9273499DF47F1B3B72168B3861F51779D83211E932044B25EA1
Key Value
FileName./usr/share/man/man1/dazzdb.1.gz
FileSize314
MD5824A613A648871A594250FAC0669F7C1
RDS:package_id182052
SHA-16F6B2AB7DDDA8A2A8975260B895769AF5E9BD932
SHA-2564F41618B77F55DCF937B1EDBF25A45C6F3D9CE6C9C7AEC483222A2DE91CD20F7
SSDEEP6:XtFP4R/X/9wpXIVezEv2hKJmqZywm7wCMcseeoZwFA4K/lW8abMjebnQiZMkln:Xv4VFwGVea+SmAquFdMlnabZDhln
TLSHT1FAE07846C1550572D92FAB36961D5FC30B85D01C9A1E8B9711DBF05C1DC549A8844F12
insert-timestamp1679426053.3545508
sourceRDS.db
Key Value
FileName./usr/bin/DBmv
FileSize79976
MD5CC9039CDCDF701F402F814F5DEAB5DA2
SHA-1756DCE269D5D5207E5BCEF1A6A5D2EC7C93D725B
SHA-256E7796CB546F0F0BB8CE0478536CC5044E8F1EAC2EF6139DCF2463F6FAFC27E0E
SSDEEP1536:6cP+Ma6TV0T8AAMImr62RRzB9aeAzPLJtLQ2e5p8XRHs9YpKMM:p+MaeV/IFnBzArLJtkKBHmYQX
TLSHT1D573089B6632C5EAD1717BB3825EABB3932335391BC70F1CAF5EC70154F26414A04AB6