Result for 4E2C97ECCF540EE9BAB92C0C5A3404D726FFDA83

Query result

Key Value
FileName./usr/lib/R/library/Rsolid/R/Rsolid.rdx
FileSize340
MD5DFECA0D2C6BF68B3FCA6B62A6EF8223D
SHA-14E2C97ECCF540EE9BAB92C0C5A3404D726FFDA83
SHA-256BA961CFB6DDF69367153F13971D224F9BC42E2A42302194D838887B6695EB100
SSDEEP6:Xt9R/6lK2UU12K04M/Y1pnXgTY2RbZK3ZpSu2SvzXGzK+ftDXr6E30EyQCr//:XJOK2P1t0TY1pwTFRIZsu2SX3+1LB0ZT
TLSHT18AE028ED5D0CFA18CF87C7FFD454B9104454082605C7A500A7374830563C0265DC0D44
hashlookup:parent-total1
hashlookup:trust55

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Parents (Total: 1)

The searched file hash is included in 1 parent files which include package known and seen by metalookup. A sample is included below:

Key Value
MD54BEDEBBE6D54D45B1B1645CEEC0B76F0
PackageArcharmv7hl
PackageDescription Rsolid is an R package for normalizing fluorescent intensity data from ABI/SOLiD second generation sequencing platform. It has been observed that the color-calls provided by factory software contain technical artifacts, where the proportions of colors called are extremely variable across sequencing cycles. Under the random DNA fragmentation assumption, these proportions should be equal across sequencing cycles and proportional to the dinucleotide frequencies of the sample. Rsolid implements a version of the quantile normalization algorithm that transforms the intensity values before calling colors. Results show that after normalization, the total number of mappable reads increases by around 5%, and number of perfectly mapped reads increases by 10%. Moreover a 2-5% reduction in overall error rates is observed, with a 2-6% reduction in the rate of valid adjacent color mis-matches. The latter is important, since it leads to a decrease in false-positive SNP calls. The normalization algorithm is computationally efficient. In a test we are able to process 300 million reads in 2 hours using 10 computer cluster nodes. The engine functions of the package are written in C for better performance.
PackageMaintainerFedora Project
PackageNameR-Rsolid
PackageRelease33.fc33
PackageVersion0.9.31
SHA-181B0696CB67B4B9EDF52B319C29CFECDDD1F3A14
SHA-25642F56B9501EE4A57A0D7F58574B2CE95A5DF8C0156E0A4F1B3767223806CB763