| Key | Value |
|---|---|
| FileSize | 6408676 |
| MD5 | 84C4F10F5A6411883F0E749EB7848F2F |
| PackageDescription | tools for early stage alignment file processing This package contains some tools for processing BAM files including . bamsormadup: parallel sorting and duplicate marking bamcollate2: reads BAM and writes BAM reordered such that alignment or collated by query name bammarkduplicates: reads BAM and writes BAM with duplicate alignments marked using the BAM flags field bammaskflags: reads BAM and writes BAM while masking (removing) bits from the flags column bamrecompress: reads BAM and writes BAM with a defined compression setting. This tool is capable of multi-threading. bamsort: reads BAM and writes BAM resorted by coordinates or query name bamtofastq: reads BAM and writes FastQ; output can be collated or uncollated by query name |
| PackageMaintainer | Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com> |
| PackageName | biobambam2 |
| PackageSection | science |
| PackageVersion | 2.0.95-1 |
| SHA-1 | 4C8826B82D73745F584481D00E66566AA6F3A875 |
| SHA-256 | FA408FD497C1DF1B158FB911C683F018A1052313AB843BA8B0E7094A47DA4E5F |
| hashlookup:children-total | 114 |
| hashlookup:trust | 50 |
The searched file hash includes 114 children files known and seen by metalookup. A sample is included below:
| Key | Value |
|---|---|
| FileName | ./usr/bin/bamstreamingmarkduplicates |
| FileSize | 1075704 |
| MD5 | 22C950B998274C04395208EEAFDFECEA |
| SHA-1 | 01E95DCAFA80351517D2FB79C551EEE926DF3FA5 |
| SHA-256 | CE183C2BD7DA687C12E0444841D3103E21FA43B63440613F0F3E5E2612A77111 |
| SSDEEP | 24576:Icsvu1iN9G2N0C9m2WQx33rk7nWeoZUoX9EsfQCPGzLu:0vu1iNxD0Fs3g7n7oZUoX9EsfQCPGzi |
| TLSH | T1C0354A03F176AC6CD0DDD530474B8566A031BCA989383A6B3688DF260E66F75EB3E750 |
| Key | Value |
|---|---|
| FileName | ./usr/bin/bamfilterheader2 |
| FileSize | 244208 |
| MD5 | 732EE71C60E0E0B686E26921A751E724 |
| SHA-1 | 04CF3725080B6583634EBE2A0723300AE0F1317A |
| SHA-256 | 7FF1E241AF23B37D0F4DAB141BE4692A801D98AF2F32251418D96A6C86EFB7F0 |
| SSDEEP | 6144:ao1Dk2o4VkUwd4NzMKv269hWE8mCoSP6a1wVms5:/BVv/Da |
| TLSH | T1D5342907F1669C7CD8CDD6708ACB82166520BC5D9A30362F26D89B270D67B34CB3EB56 |
| Key | Value |
|---|---|
| FileName | ./usr/bin/bammaskflags |
| FileSize | 391664 |
| MD5 | 4D4F6CA742CE9DD631D1465A8766043E |
| SHA-1 | 0768781DE5D6396964C98E2595C4679A3B98BA87 |
| SHA-256 | C5D7378C1F2ECC1361B85344DD64F69FC1A1C1BE27491C5ADA59FE3EDB25A0AC |
| SSDEEP | 6144:V7lDKVtAZQ2apyW8GF13/sn+iH0xTlnbG0U/LHSdpPrE48f8k1e:av7HL/sOrbpoLL |
| TLSH | T17B843907F976587CC0D9DA30479B9167A531BCAC8A343A6F36C88B230D66F24AB3D751 |
| Key | Value |
|---|---|
| FileName | ./usr/bin/bamlastfilter |
| FileSize | 903672 |
| MD5 | 9DAEC5B76610C8046367E2F457FA0EA7 |
| SHA-1 | 0779BEDA40B88E6DC30C654EB6F9DC7F7101268D |
| SHA-256 | 29A61C1EDF3775B1E367A74E92075B09C095FF8AD9CC8C383AC1104CD99E79C6 |
| SSDEEP | 24576:0KExSdFFBbDFAcTL6oi8tp0/s8HvsfQnB9GsCCD:1ExeFvFA+E8tp0/s8HvsfQnB9GsCC |
| TLSH | T17E154913F1769C6CC499D530479B852A5071BCAC8A383A6B32C8CF661E67F74AB3E351 |
| Key | Value |
|---|---|
| FileName | ./usr/bin/bamranksort |
| FileSize | 793080 |
| MD5 | 8162133346008EE6A6C9AD459D5E2620 |
| SHA-1 | 07B2C8E76A72E4E63956624C706B158ECFE31729 |
| SHA-256 | 92A27E1AA97EAC0AD69E221A595A8E53ABC8117C09D47F2655A69E1AD48DE523 |
| SSDEEP | 12288:Ff0GFUtE4+UoDyk7kBhgAHU7ctkBI7ijsfQnqNGtCp:FfXUt2UGkBhgA0IiI7ijsfQnqNGtm |
| TLSH | T1DCF44B17E17A6C6CC09DD930438B81666531BC698A383A6B31C8CF662E67F74E73E351 |
| Key | Value |
|---|---|
| FileName | ./usr/bin/bamadapterfind |
| FileSize | 973304 |
| MD5 | 471D56E3FFB4830D687E1800FF156933 |
| SHA-1 | 098F1A9D348DA03E05064C7F81FAD6AB63981036 |
| SHA-256 | 0CEF0BF442106BF0DF4A952A0CA78ED59DD88751ED1EF19B4C3ABD7A495A0E83 |
| SSDEEP | 24576:J1yvNr0HKhOryW3nxh7m8unsfQncUGeI7:JQlr0HKAnxh7m8unsfQncUGeI7 |
| TLSH | T1A8254903F176AC6CC499D570474B81669021BC6889383A6B3AC8EF661E67F74FB3E351 |
| Key | Value |
|---|---|
| FileName | ./usr/bin/bamtagconversion |
| FileSize | 784888 |
| MD5 | AD253676A759FAE05980045364B4ADAE |
| SHA-1 | 0BF5BC7478101E1554C45B88729CA471D61D43E0 |
| SHA-256 | 1028F2D74CD8F4D68891CBE4CE88AAB19ADFE208E7C8EBBBECFEC38CF358EF98 |
| SSDEEP | 12288:xQjw43XcVIItM9Ji9XnBOd1+X89XRNO8JZjsfQnSNGtW:xQU43XwIYM9Ji9sd1+X89XbO8PjsfQnw |
| TLSH | T1CBF43B17E17A6C6CC09DD930474B856A6431BC689A383A6B31C8CF660E67F74EB3E351 |
| Key | Value |
|---|---|
| FileName | ./usr/bin/bamfilternames |
| FileSize | 395760 |
| MD5 | 7A793291150B94647E3A4C8BD40BCCB8 |
| SHA-1 | 0D7B2D6F1ABCDD13919495AA55448FAAAC2BDF3C |
| SHA-256 | EB27AB6841DA9DD78E6EEFA6F015307EC746CD4BD7C00DB9F544F627A729E286 |
| SSDEEP | 6144:uHPDOAADKkT7pPmOLeUMIg19EcUA5bIYVAMSgphh9/zSXLIdBBJ3g3+AEEA:uCxmBNrLzzbIoSkV/eXLi |
| TLSH | T1EC843907E57A587CC0D9DA30478B82666531BC9D8A343A6F36C8DB330D66F24AB3D791 |
| Key | Value |
|---|---|
| FileName | ./usr/bin/bamclipreinsert |
| FileSize | 428528 |
| MD5 | 714347D3034E0BFBF73708E34C913767 |
| SHA-1 | 0E95CDDD101D0B495A84C4870B13D428AAF7F463 |
| SHA-256 | A049303451BA1DDE8C2D264F826127EF27F2898999B39291B1F55F3FF9465F0E |
| SSDEEP | 6144:tbvlDKbTYe4P5vIowIetcP/i7AZCajENDBnHoy/cl3ERLuV5xRMmsoVhnEs7:WeLeKS7fajQ5IyUl3KLc/ |
| TLSH | T16A943907F566987CC0D9DA30468B9167A931BC588A343A6F36C4EF321E66F24EB3D741 |
| Key | Value |
|---|---|
| FileName | ./usr/share/man/man1/bamchecksort.1.gz |
| FileSize | 653 |
| MD5 | 38F0E9A258692F4719A26E9B9289DADF |
| SHA-1 | 1ADD28A41A9A6B92EF8AF29D56151835032C1077 |
| SHA-256 | 7A96445518E1E03E60ECB64D56EEBA46E174B3FD8C78558008FD2E417BB8FF82 |
| SSDEEP | 12:XFclNBUF0q1oBVJVF/ZEoy3HS6xKpiEK+4evygTNbO2ZKisBCDHG3qKq9iR:XFclkW7N2B55Emev7TNbOsK/CaqKYiR |
| TLSH | T111F023149B4093E985F9CFB4E501D9097AA797DA834CFA985190F11456C6AC433D0C84 |