Result for 49F1446FCC82B255147B9268089398EFA94425FB

Query result

Key Value
FileName./usr/lib/R/library/Rsolid/DESCRIPTION
FileSize650
MD55702AF75AF3EB217F858C71DE477A7C8
SHA-149F1446FCC82B255147B9268089398EFA94425FB
SHA-256D6FD27EB88DCA7479A6B928BF0A5218B8D68465C43917E7319A588AC51949B82
SSDEEP12:06+QWtHbrXFFMB2X+5XaLzcSDx1JvLyLns2799Zv5PX7JFeMfjpViFbJDoG6dQ3:ontPXFF7u5WDx1JvmLnnDZv5lFe6pAFl
TLSHT11EF0FE01DB2AE771E947428E08F4CB694A746063A79994A4F98E4C10DA0034131631A8
hashlookup:parent-total1
hashlookup:trust55

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Parents (Total: 1)

The searched file hash is included in 1 parent files which include package known and seen by metalookup. A sample is included below:

Key Value
MD57381166D11926B0FD9ECB72FE7A3CAA0
PackageArcharmv5tel
PackageDescription Rsolid is an R package for normalizing fluorescent intensity data from ABI/SOLiD second generation sequencing platform. It has been observed that the color-calls provided by factory software contain technical artifacts, where the proportions of colors called are extremely variable across sequencing cycles. Under the random DNA fragmentation assumption, these proportions should be equal across sequencing cycles and proportional to the dinucleotide frequencies of the sample. Rsolid implements a version of the quantile normalization algorithm that transforms the intensity values before calling colors. Results show that after normalization, the total number of mappable reads increases by around 5%, and number of perfectly mapped reads increases by 10%. Moreover a 2-5% reduction in overall error rates is observed, with a 2-6% reduction in the rate of valid adjacent color mis-matches. The latter is important, since it leads to a decrease in false-positive SNP calls. The normalization algorithm is computationally efficient. In a test we are able to process 300 million reads in 2 hours using 10 computer cluster nodes. The engine functions of the package are written in C for better performance.
PackageMaintainerFedora Project
PackageNameR-Rsolid
PackageRelease6.fc17
PackageVersion0.9.31
SHA-177D1C6C88003B1B495647F0A7B501DF035B0C730
SHA-2561C3EF99E8701F7E066B87E684E2AC28DF94A6E7C71D7AC7FC2199CD166EAE6CB