Key | Value |
---|---|
FileSize | 5620872 |
MD5 | CF45EF799BDAEB3752CFC1D2011BAC09 |
PackageDescription | tools for early stage alignment file processing This package contains some tools for processing BAM files including . bamsormadup: parallel sorting and duplicate marking bamcollate2: reads BAM and writes BAM reordered such that alignment or collated by query name bammarkduplicates: reads BAM and writes BAM with duplicate alignments marked using the BAM flags field bammaskflags: reads BAM and writes BAM while masking (removing) bits from the flags column bamrecompress: reads BAM and writes BAM with a defined compression setting. This tool is capable of multi-threading. bamsort: reads BAM and writes BAM resorted by coordinates or query name bamtofastq: reads BAM and writes FastQ; output can be collated or uncollated by query name |
PackageMaintainer | Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com> |
PackageName | biobambam2 |
PackageSection | science |
PackageVersion | 2.0.95-1 |
SHA-1 | 49354565E35FAA9D5A1AEAEAC0D4A9D9A23D5DCD |
SHA-256 | F0E115D708E6C02DFFD0D9759DAAF30032F06498A9AFF2FCD67F60227FE7A004 |
hashlookup:children-total | 114 |
hashlookup:trust | 50 |
The searched file hash includes 114 children files known and seen by metalookup. A sample is included below:
Key | Value |
---|---|
FileName | ./usr/bin/bamscrapcount |
FileSize | 633352 |
MD5 | E3358175057121B7406A91A7FA649021 |
SHA-1 | 08F4817E0E75E3BA2748269B9FED4896C3BC8EE7 |
SHA-256 | 818F4F60B125162C01D185E7F35D99CC4671301B5E4843B3E224C78F9A93BED3 |
SSDEEP | 12288:Mq0ABQk5LRkZjIALSu2DDeYCS3rqsfQnpDGJ:Mq0ABQk5WZVc0S3rqsfQnpDGJ |
TLSH | T17ED48E03F52F7C01E9C7F33CAF4E2267601BAC98EA2890B67927462E9BE6455D73D140 |
Key | Value |
---|---|
FileName | ./usr/bin/bamsplit |
FileSize | 260368 |
MD5 | 0C841139FF5BAF0C2A62865D9A5C2E74 |
SHA-1 | 0C0AC8D200B910FA0EA22C378B3BC0539F4B54BD |
SHA-256 | B1B3B28225B7AFDB27E5E425D2874D97780A5F96E421E7EC36DBB6B8F3B17C9F |
SSDEEP | 6144:9sDDKSfNwx6lLDOzT76tyJ8TBYDHpLM3I6E:+O68P7JJ8TBYzpLD6E |
TLSH | T11D444B47F52F7C10EDC7B73CBF4B536A9603AC9DD92881A678118A0AABE7584DB3D140 |
Key | Value |
---|---|
FileName | ./usr/bin/bamrefinterval |
FileSize | 801320 |
MD5 | A020CFC333862126A1A145A30C8C37F4 |
SHA-1 | 150E5C1634684BE3E9F7C92E502CE38A6A10DE0A |
SHA-256 | 07210DEC263BC7E575FD2B6CBA46AA39CACA272B9FD3D277F710DAA73BAC44F4 |
SSDEEP | 12288:EoN5YnSRcaIV6MK9TApdISokzi3rPsfQnZ9G9s:lN5YraIV6M1pdISBzi3rPsfQnZ9G9s |
TLSH | T193057C47E53F7C01EE87F63CAF4E136A5007ACDDD92890B27827460AABDA599DB3D140 |
Key | Value |
---|---|
FileName | ./usr/bin/bamfilternames |
FileSize | 362800 |
MD5 | F0ABA249135CFD450BAB8F09F0F2A024 |
SHA-1 | 15DFABCABCED427182752723B0BFE3C6A93AF8C9 |
SHA-256 | C76580BF36B77E1F4A04BF042FF61A2174E412D12D13A26CFBCD03B7889F8A89 |
SSDEEP | 6144:YNfAGlDKsatEViR84orPYqOsiECRgOVqApqf9e:6PTiR8rDiEmVpG |
TLSH | T1FA747D07F52F7C11EAC7B73C6F4F53279503AC99DA2981A67922DA1B8BE6944CB3C140 |
Key | Value |
---|---|
FileName | ./usr/bin/bammapdist |
FileSize | 649736 |
MD5 | F1486F043C982611F3B0D6E96E7B8D09 |
SHA-1 | 17C5ECAC4E9C8E4386BA2AE9F55402D1B3B3DED7 |
SHA-256 | 5D89429A7F782D0487ACB66007A8AA9FAF9E6188247EBF8CE0A5364A3E504848 |
SSDEEP | 12288:oo4nOKRvnqyR4snOuvEt1NnOQfS3rqsfQnQDGZH:oo4nOCqzsnOu8cUS3rqsfQnQDGZH |
TLSH | T18FD46C13F52F7C01E987B33C7F4E127A6017AC99EA3890B67927862E9BE6495D73C140 |
Key | Value |
---|---|
FileName | ./usr/bin/bamtofastq |
FileSize | 981560 |
MD5 | 61BBA6E52C834C14A5CB7CF14FAB41E4 |
SHA-1 | 19D3605B7FCC0E52D2E3AA5AA43DBC42FBB67083 |
SHA-256 | 7453D3FE17DFC212285A452C3074D5736BA2E99CE581D9156C24E703A0D07CB2 |
SSDEEP | 24576:dMe0IjxPWU3uxJ++nV53HOqorYsfQnlPNGfCUUh:sGx+Uis+nV5XOqorYsfQnlPNGfCU |
TLSH | T158257D57E42F3C01E9C7F77CAF4F13EA510BAC95E92884B63527460EABA64A5CB3D140 |
Key | Value |
---|---|
FileName | ./usr/share/man/man1/bamchecksort.1.gz |
FileSize | 653 |
MD5 | 38F0E9A258692F4719A26E9B9289DADF |
SHA-1 | 1ADD28A41A9A6B92EF8AF29D56151835032C1077 |
SHA-256 | 7A96445518E1E03E60ECB64D56EEBA46E174B3FD8C78558008FD2E417BB8FF82 |
SSDEEP | 12:XFclNBUF0q1oBVJVF/ZEoy3HS6xKpiEK+4evygTNbO2ZKisBCDHG3qKq9iR:XFclkW7N2B55Emev7TNbOsK/CaqKYiR |
TLSH | T111F023149B4093E985F9CFB4E501D9097AA797DA834CFA985190F11456C6AC433D0C84 |
Key | Value |
---|---|
FileName | ./usr/share/man/man1/bammerge.1.gz |
FileSize | 1453 |
MD5 | D860932900A7A3AAF7CA564AB85F249F |
SHA-1 | 1E9DFB3EA213BB8C05C451EC5B022B9BE2B9638F |
SHA-256 | 05AF51B36ECE5FA49D1EBBE88D7EA7EA3E2FD80F1C782FF4C5AC1B53143E96C7 |
SSDEEP | 24:XiLQBMJY7joJA/l+RtO47lcR389vdBgYPIJyRh9wOALGYWoAZ1uLJJU97zpA:X7MJgj/lGkWlcVWdBgcIEdIDLAD6U9pA |
TLSH | T1DA311B4F6F75873EFD03DDC1559653E3AF6A4CD032554600315048A8823FA1E31AE4C0 |
Key | Value |
---|---|
FileName | ./usr/share/man/man1/bamfilterheader2.1.gz |
FileSize | 1194 |
MD5 | 449AFE4688B7F42F7A497906C05C5664 |
SHA-1 | 1F50C010DC15F053492393EAD03C09ADCB4C3599 |
SHA-256 | B5661483DC534CA9B8E09FA4C3F9629791DE891A4B2E495F99FDA7D1A229BA55 |
SSDEEP | 24:XvHC4O1DLo9P7z5oemjmGdFsVzDUUtLsWYCZIp06jedOYsz:XxO1/o9TzSLmGTsVzDUUtYC20pOYsz |
TLSH | T156210A9040A51949BC2DCC1FAE53BC8238421B8D3344061D48C135361192AE43BDF915 |
Key | Value |
---|---|
FileName | ./usr/bin/bam12split |
FileSize | 362800 |
MD5 | 89AFFC34630DDB21C1DBD824D8935CB5 |
SHA-1 | 20A3CBEBC8966AE9D7F953773A55FD7468D1878F |
SHA-256 | 83BE032F9BF83A1920C589B2AE72EE9B13EB13C9449D67FEBBDC9C38E49109CE |
SSDEEP | 6144:e5ADKXaH1NPeannuIE6OQSflDPMpRgY8e:uS1nuyS9Ypr8 |
TLSH | T1F5745B13A52F7C01EAC7F73C6F4F532A9507AC99DD2980A67522CA1F8BE2985DB3D140 |