Result for 47CEA2719F6056F113B3857D484D2CCC9F3A6645

Search result
Graph view
Children (243)

Query result

Key Value
FileSize932648
MD5FB860AE1229A4FB834F3D60F1D3E5374
PackageDescriptionintegrated RNA-Seq read analysis CRAC is a tool to analyze High Throughput Sequencing (HTS) data in comparison to a reference genome. It is intended for transcriptomic and genomic sequencing reads. More precisely, with transcriptomic reads as input, it predicts point mutations, indels, splice junction, and chimeric RNAs (ie, non colinear splice junctions). CRAC can also output positions and nature of sequence error that it detects in the reads. CRAC uses a genome index. This index must be computed before running the read analysis. For this sake, use the command "crac-index" on your genome files. You can then process the reads using the command crac. See the man page of CRAC (help file) by typing "man crac". CRAC requires large amount of main memory on your computer. For processing against the Human genome, say 50 million reads of 100 nucleotide each, CRAC requires about 40 gigabytes of main memory. Check whether the system of your computing server is equipped with sufficient amount of memory before launching an analysis.
PackageMaintainerUbuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
PackageNamecrac
PackageSectionscience
PackageVersion2.5.2+dfsg-2build2
SHA-147CEA2719F6056F113B3857D484D2CCC9F3A6645
SHA-25670A7C69D74E2B4E1FDAF71AFE317B94C3BBD342511C1245470BC15F6EE3CE4EC
hashlookup:children-total243
hashlookup:trust50

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Children (Total: 243)

The searched file hash includes 243 children files known and seen by metalookup. A sample is included below:

Key Value
FileName./usr/share/doc/crac/examples/test_f/bug/bug-17749-genome.fa
FileSize1232
MD514C065ABD67D129666BBB81D80E8C9E2
SHA-10054DE3CB50B065A9DDC3C6B0EC8EFD7250E88B4
SHA-256E2DAEBAC134F280F9D111831F0F607A4E9E4B11999C5AF223DE532F311A67797
SSDEEP3:PxJ3rkQrfioiixvriTkHkikRkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkk7:JJkivriTRRSXUmT4ckduzLJRcai5Ul
TLSHT173219EFAD7F059CDD352018B081C13E18CE4616F4A03A71129E4132D0D64861E48B445
Key Value
FileName./usr/share/doc/crac/examples/test_f/causes/genome.ssa
FileSize7371
MD5B4329AA686DCB3AAB33593F2B4264AD8
SHA-10093F72E88241911EB1B24D3655F3DF9CD6FA693
SHA-256E4A4428CD6546458F7B2B633C5790D3B7E15D4D10E758D5B2C226666CE3F998C
SSDEEP48:2n/J4hQyoBdln2Enjzj7qOXkrR8mTSffblL30wnYNVAeqaAC7jMjh:2Bb5Bd92ujzvqXrR8fRL3PuV0c7jMjh
TLSHT1A8E1B50F9BD54EC7D02E0DB5448B9B5C25ABDD354B120603DA387D2B6EB62B43B81E78
Key Value
FileName./usr/share/man/man1/crac.1.gz
FileSize6450
MD5FF41610D7DA1E00CF60575AB251FA52B
SHA-101221DCCA92AA3A61729F8B3BD24EB15E62E92F9
SHA-256E6591ACA4C8EC3584896E881897DC92B651FD95AF7650D7733596EEC441CC9BA
SSDEEP192:iFLlhvxlkCZoG7hpaszn6zBhZIiVHNQGGC:iFLXvxeCZosa46z5IipNQ2
TLSHT1CCD18DA5C55DA1F020E3B9E6C73DC67D7E69F4664E2CADE6B84D1897E1E4FB0120C120
Key Value
FileName./usr/share/doc/crac/examples/test_f/bug/bug-18793.should_get
FileSize383
MD589730026C64E5C73CCFCF7CCA9A7CFC4
SHA-102067B1AB1D583551E2B833CD65869D20BAB953E
SHA-256D9D5747898B30F68F060ACB543ADDBA8D40193AE4C38FFBF2729E26A4832CC76
SSDEEP6:Vw+tn2MnC+nn9BKw+tnIkgrikno2EGw+tnIvQ1o2w+HGVar3f/n:uGnPYgrHucWHZaLn
TLSHT190E092A5C859303181E8150EBE27C97AE5FDB52473C513605C10EAE9C14FD5D70A5CA0
Key Value
FileName./usr/share/doc/crac/examples/test_f/bug/bug-16581.should_get
FileSize496
MD5CAB4B11B640543B55CD6EBB154765D03
SHA-1038498A319DCF5E4E01D7BC764EFEBACF2309946
SHA-256C171B25457528E95939377C84C607A115AA6CC70084DD698FBFA1E1FBC2B3CA3
SSDEEP12:uRnx4ghWGvhWGWHAAz6VYtCDoMGnXXhIfU8n3V:ubFXvXYLz6VYADSn+fXl
TLSHT169F059F1095B36300BF0210F7B27DAFBDAFC663433C416609C009B9D884EA14E0A66A0
Key Value
FileName./usr/share/doc/crac/examples/test_f/index_genomes.sh.log
FileSize39
MD5EBDAC7A9CDFA377E882E0AC605D32978
SHA-104D151A357CE3865AFEFC578935B04AF07EEA18C
SHA-256527DEC56412A9CC311696DCA3F5808F16670614CDA78A6AB895EEC5DAEC0DF1A
SSDEEP3:52213S4MqdWf2:KqdY2
TLSH
Key Value
FileName./usr/share/doc/crac/examples/test_f/bug/bug-16581.sam
FileSize655
MD5073ACEB16B13BA98DC95B0DBCF36E8C0
SHA-105771233E52AB27F53ABAFFDED34BE862D1D344D
SHA-25635771FD0B92CB4985132650A10BBC2FFCFA9DC4E445B5CDEFFF68EC79808844F
SSDEEP12:nC5YQVyL7/nx4uQvWXb/XZ35RisW3vzbLagaiYy16wjWPigRisgIo08n3yLagaor:S43ZsCbF54xbb3aiYy1bM4C4i3aR8
TLSHT18DF07D7809BE94B8A6D2084F3BC19A5ECE78641877C167B0DD1DC79D08C89E4E0CB348
Key Value
FileName./usr/share/doc/crac/examples/test_f/cigar/consistency3.should_get
FileSize2808
MD560A0224B850B51CA86A9B6726DE6B239
SHA-106AB601A9E9DEC5B4183BCCBF91E05C1E878F5C2
SHA-2561B3D8C5DE2EA3CFC9EEA7078E9269B538565594A69E53A034847BF590191DA0E
SSDEEP48:0lN+zryxYx3xlN7BO7JRw0a0aSuJSL0nQ7uS:6N+a2txj7BO7QSIwuS
TLSHT1FD514C37A21A255EFAD2DD54F419E305EFF26468262BD78809C5EAC3480C84CA4DB0F9
Key Value
FileName./usr/share/doc/crac/examples/test_f/cigar/consistency3.sam
FileSize17415
MD55002532C276F97CA3A3BE6FFA76558C4
SHA-106B6A73CF1509AB6A1B57206B3C010A48D616A23
SHA-256C40E2D4207E05D843A61049888502502CC3F181758E17291FE839C0A5027D74D
SSDEEP384:RyH1bx81bxAWVX5ENO1AKKrHsOHvBUpWC6Q0U23+WPKObdcrj7CPf2E8NBWkJRzA:2++WVX5ENliuxYxm
TLSHT14172E4A4F86E8E4CB0C02DC95CFD94ACC67828CDAB4ACAD1EAA9E11C15E45CDD4DF174
Key Value
FileName./usr/share/doc/crac/examples/test_f/bug/bug-case-sensitive.tap
FileSize502
MD5FDC68B5C1983F2C2F34FB9460188E2B6
SHA-106C513AFF8BD3F495468C2D44CEA4A610B2AF202
SHA-256AE78901D7D7237B13A961A7539F519C3C66C23F320EB2D83F7D4D7352D66D8E5
SSDEEP6:SbOM7qwwJF/rFtEWD9xM7qwwJF/rFsyVM7qwwJF/rFvPdaLxM7qw4oWJF/rFtEW+:WO5L/IS5L/X5L/RixPL/IHPL/kPL/Rk
TLSHT193F05EBF2BDC173307A52210B909308F3715EEB49F0069B9927CF0092205DE496A35D3





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