FileSize | 504734 |
MD5 | 47A6AB403934C35835C9407C8E70298A |
PackageDescription | rapid core genome multi-alignment
Parsnp was designed to align the core genome of hundreds to thousands of
bacterial genomes within a few minutes to few hours. Input can be both
draft assemblies and finished genomes, and output includes variant (SNP)
calls, core genome phylogeny and multi-alignments. Parsnp leverages
contextual information provided by multi-alignments surrounding SNP
sites for filtration/cleaning, in addition to existing tools for
recombination detection/filtration and phylogenetic reconstruction. |
PackageMaintainer | Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> |
PackageName | parsnp |
PackageSection | science |
PackageVersion | 1.2+dfsg-3 |
SHA-1 | 3A8C05B117221BF875ADCD16292B1C04CC614B26 |
SHA-256 | 0BC77252E9059F2B3EE938D878B855EC0DDBB6A0A93C099F79D0F03B6F9EF94A |