Result for 3288828714C98B029EE91BBF0C4FFC6138697F88

Query result

Key Value
FileName./usr/lib64/R/library/Rsolid/R/Rsolid.rdb
FileSize15236
MD5CCFA7FF653A0669DACA26AA276B690DC
SHA-13288828714C98B029EE91BBF0C4FFC6138697F88
SHA-2565AE4ABE361D4EBB6F172D5F6F4704552E2AEDEC4C0CD2078DCF0324097F08AAB
SSDEEP384:XM2U708GedAWkJD3j/xL7CtF+uMXjmVoBs0ZNBDySGt7v:0708/k557C6Lz85+NBDybv
TLSHT18362D1396580BBE1628C640434D1DCCFA542E82336C12A3A75B237A25E5D6037EDFBF4
hashlookup:parent-total1
hashlookup:trust55

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Parents (Total: 1)

The searched file hash is included in 1 parent files which include package known and seen by metalookup. A sample is included below:

Key Value
MD528FD23D01BF4AC152F48544B6152CFBF
PackageArchx86_64
PackageDescription Rsolid is an R package for normalizing fluorescent intensity data from ABI/SOLiD second generation sequencing platform. It has been observed that the color-calls provided by factory software contain technical artifacts, where the proportions of colors called are extremely variable across sequencing cycles. Under the random DNA fragmentation assumption, these proportions should be equal across sequencing cycles and proportional to the dinucleotide frequencies of the sample. Rsolid implements a version of the quantile normalization algorithm that transforms the intensity values before calling colors. Results show that after normalization, the total number of mappable reads increases by around 5%, and number of perfectly mapped reads increases by 10%. Moreover a 2-5% reduction in overall error rates is observed, with a 2-6% reduction in the rate of valid adjacent color mis-matches. The latter is important, since it leads to a decrease in false-positive SNP calls. The normalization algorithm is computationally efficient. In a test we are able to process 300 million reads in 2 hours using 10 computer cluster nodes. The engine functions of the package are written in C for better performance.
PackageMaintainerFedora Project
PackageNameR-Rsolid
PackageRelease34.fc34
PackageVersion0.9.31
SHA-18942C13A17F8EE5498E31AD72E595AF40F6A494C
SHA-25662B91621A9BE6D4647D21DC4BB209DF30C5B2CEA6E9A3160D8DD335E80CB25BB