| FileSize | 530840 |
| MD5 | 3C91B9A94A5E4A434D22FEADD300F29A |
| PackageDescription | rapid core genome multi-alignment
Parsnp was designed to align the core genome of hundreds to thousands of
bacterial genomes within a few minutes to few hours. Input can be both
draft assemblies and finished genomes, and output includes variant (SNP)
calls, core genome phylogeny and multi-alignments. Parsnp leverages
contextual information provided by multi-alignments surrounding SNP
sites for filtration/cleaning, in addition to existing tools for
recombination detection/filtration and phylogenetic reconstruction. |
| PackageMaintainer | Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> |
| PackageName | parsnp |
| PackageSection | science |
| PackageVersion | 1.2+dfsg-5 |
| SHA-1 | 3145C428AAE469686C0EC4298EA8C4326F3FFAD4 |
| SHA-256 | E796618BFAE230F5D62BEDE0954D4168FD51450B9EC33B4DC9BBCEBDC3DA9B42 |