Result for 127A332F6AF2528338AAC6A336713504A98F46A6

Query result

Key	Value
MD5	99F1515439FB770832FCAC4E146D54BC
PackageArch	ppc64
PackageDescription	Rsolid is an R package for normalizing fluorescent intensity data from ABI/SOLiD second generation sequencing platform. It has been observed that the color-calls provided by factory software contain technical artifacts, where the proportions of colors called are extremely variable across sequencing cycles. Under the random DNA fragmentation assumption, these proportions should be equal across sequencing cycles and proportional to the dinucleotide frequencies of the sample. Rsolid implements a version of the quantile normalization algorithm that transforms the intensity values before calling colors. Results show that after normalization, the total number of mappable reads increases by around 5%, and number of perfectly mapped reads increases by 10%. Moreover a 2-5% reduction in overall error rates is observed, with a 2-6% reduction in the rate of valid adjacent color mis-matches. The latter is important, since it leads to a decrease in false-positive SNP calls. The normalization algorithm is computationally efficient. In a test we are able to process 300 million reads in 2 hours using 10 computer cluster nodes. The engine functions of the package are written in C for better performance.
PackageMaintainer	Koji
PackageName	R-Rsolid
PackageRelease	2.fc15
PackageVersion	0.9.31
SHA-1	127A332F6AF2528338AAC6A336713504A98F46A6
SHA-256	E88E40D877A66C4D2C6435B97196C0D69492145F322D82313B9C3376056144DC
hashlookup:children-total	19
hashlookup:trust	50

Network graph view

Children (Total: 19)

The searched file hash includes 19 children files known and seen by metalookup. A sample is included below:

Key	Value
FileName	./usr/lib64/R/library/Rsolid/INDEX
FileSize	175
MD5	D454BC562761C02412D381C9A347C69C
SHA-1	177007733670BF451339D4FB30F6C2632B2E4258
SHA-256	BC1CD3489BA8A37B576D916B24400DF8A7F231E00DB0D0981B1AA4CA93CF557D
SSDEEP	3:Yp//aLRMJgVEJw18KElKXvGQ1xWxQT3/bCFY:sMMBJ+8KrXvaQTCY
TLSH	T176C092B3E2984E22A93BA15758C88BA041B572333B4A6A8F7C1EA4401B4206036367B8

Key	Value
FileName	./usr/lib64/R/library/Rsolid/data/prop.Hs.rda
FileSize	97
MD5	2ACB03264FA6AB75C0F89FD9FCA99975
SHA-1	18F0EB0CC822D137117CBB2B77E065E1417DF61A
SHA-256	D531C4D7D7107A4953A560CE5897AF646E1A1D8EC05D462E8C6474F850140BC8
SSDEEP	3:FttsdFtD3L5WS1KKmrOrDOIJ/n:XtgLUGPVJ/n
TLSH	T1C6B01298808A3410D0CACC312010099A11D7B401461C2CCAA2200199C0982C7CB5D92C

Key	Value
FileName	./usr/lib64/R/library/Rsolid/help/Rsolid.rdx
FileSize	145
MD5	05BEE4DCC93CD613EC0510FFE2B0419A
SHA-1	21DB352EA8483A96F298B0D3B6DEB58D4C5E2FB3
SHA-256	35CE994F7AA686837814F278CD8C865464964FE408928119B440D8B28B1E33C5
SSDEEP	3:FttVFH2igLx9x0AULZYvxCJaLRjGjrLG/JP9HVsGBxufI:XtVFWB9ULCUaLRjGXy/BRBkfI
TLSH	T12CC02BE7D245E827E97E53BC34945F75250F81510B00698E9460C2270F4CD58E40B114

Key	Value
FileName	./usr/lib64/R/library/Rsolid/help/paths.rds
FileSize	77
MD5	0922EF5DFBE3F40DB7B635C62D0263FC
SHA-1	356E9407F6074D7AFC82A07051C8B3A8441B766B
SHA-256	03BF761F9A08C68812E51CC92CE74C6C7D4D11C110B880A559B7569023AAE762
SSDEEP	3:FttVFH2h8hO1q1S+ZIk2c1l7qln:XtVFWh8hOc9dn2l
TLSH	T121A024430344110DC70507310450C415D4430D11F4003D07045410534140DD3DDC101C

Key	Value
CRC32	C0916E37
FileName	packloader.R
FileSize	672
MD5	6E60A4480E0345D65902FC23B54BFFD6
OpSystemCode	362
ProductCode	8388
RDS:package_id	8388
SHA-1	42E0C7459F3A0A7109CFC319A7EB2139A9B34B43
SHA-256	9EB2ED41481D643B70AD5E7B37EBF2968EC7D69D13D0F8941E6E7B160275DC86
SSDEEP	12:0INhlEn1oG+/yjYA3AMcOrw1PhMbmAbN2hh8KNMcbapSFshrE/oockwsr:0INhaIyjYU9rw1PhMbmG+h8OMcbapSFp
SpecialCode
TLSH	T1D001ACE981801DD3BB0348187CAF11099F5C712B65C8109078ED8AAA0FDCE398A63B3A
db	nsrl_legacy
insert-timestamp	1648739135.0132136
source	RDS_2022.03.1_legacy.db
tar:gname	wheel
tar:uname	root

Key	Value
FileName	./usr/lib64/R/library/Rsolid/help/AnIndex
FileSize	14
MD5	27F86373197F07D636A5545AFF2255A0
SHA-1	47E504EE5B5100037DBCF1809EA13D94F84AB65E
SHA-256	53F18991FDEA62AB48EBCF22AEFE84CC4E79DED71940693E17D1D9D156BFD282
SSDEEP	3:Y8cv:le
TLSH

Key	Value
FileName	./usr/lib64/R/library/Rsolid/html/00Index.html
FileSize	1208
MD5	F46513680079C4F512497B86348A7F3C
SHA-1	48D91DE4A21F2D24669746E1076AB8459F64495A
SHA-256	C3DCCE9079D0DB9022EE0BCA4E7E31F528BAB78D9838262FF6AFB168A1DD9A41
SSDEEP	24:hMTIXF0Sspb6MxXF0PPr5M26MFvujMR0F4h/1YZp5dLyNtiXF2g:Bepb949MMQ4eVLIti8g
TLSH	T19E216736E0643A177823A95187C02FD857616626770A9E4D2F0E347B82093EF22337AE

Key	Value
FileName	./usr/lib64/R/library/Rsolid/Meta/Rd.rds
FileSize	281
MD5	6027A10256D757289A9C86081F401C64
SHA-1	532029F56E89E97401227E42849512B3FE6F0922
SHA-256	F7C25C6AAD4E102F20B58FE9FBF2BD9D7F2F98A46F2F5E0D09778D92290F5598
SSDEEP	6:Xt/3Qto045+fgYoEKes1b3XqZW1p24Y+l5ZG9lFfffrq:X56kFEKeMKZW7i+l5Q7F3frq
TLSH	T1ABD0EB8819C42266D1E0303804C0C21A489C44024730F8B7D20319CC982098252B6C35

Key	Value
FileName	./usr/lib64/R/library/Rsolid/help/aliases.rds
FileSize	67
MD5	A031235BF36E03CDAFE5D71D54109201
SHA-1	59EB3958E9C44EF82A3B1C5B96EF3EC881CAA431
SHA-256	05D76078F1BF47E924612E7607921E1322A95B4F994BBF6BFB3246A8EAF62328
SSDEEP	3:FttVFH2ig7GyEX2/muTz2l/n:XtVFW/xPul/n
TLSH	T1FAA0220F03280000C883883002C8302AC0008F0AAC00BC0A002A03CA8A8080AF32022F

Key	Value
FileName	./usr/lib64/R/library/Rsolid/html/Rsolid.html
FileSize	3147
MD5	83175B177B2B228E79D05F90D6E48E60
SHA-1	6ADBCFC3C62A182A7F7DD14A52D15C5973986EE6
SHA-256	3AD125E659C462591816DCD3D702E9A66FF5C6A465A87BC486A3E3E6AC417F30
SSDEEP	48:Bipb+e4Ry7FFwVGNKBxQ2VfU8W1hOvfDjyNDxtJ+S7nJYF+z6mts:BheKGOVGk3xVfUH1hOvCDxtB7qIFy
TLSH	T177519619E3C8071BC822B2887DE8E7E64FD9A13627FE42C02C5DD814E60457062F6BF9