Key | Value |
---|---|
MD5 | DF0F6A7CEC87CC40641C5F6E2B293F91 |
PackageArch | x86_64 |
PackageDescription | The popular population genetic software 'Treemix' by 'Pickrell and Pritchard' (2012) <DOI:10.1371/journal.pgen.1002967> estimates the number of migration edges on a population tree. However, it can be difficult to determine the number of migration edges to include. Previously, it was customary to stop adding migration edges when 99.8% of variation in the data was explained, but 'OptM' automates this process using an ad hoc statistic based on the second-order rate of change in the log likelihood. 'OptM' also has added functionality for various threshold modeling to compare with the ad hoc statistic. |
PackageName | R-OptM |
PackageRelease | lp153.2.2 |
PackageVersion | 0.1.3 |
SHA-1 | 0D5B093E50B296BC61C74F1EE3BDFA717DA1C8AB |
SHA-256 | 893A57E0CB6421B6BDF40685B3DDC13107189687D60C23FC8F003CBB18D52C4D |
hashlookup:children-total | 230 |
hashlookup:trust | 50 |
The searched file hash includes 230 children files known and seen by metalookup. A sample is included below:
Key | Value |
---|---|
FileName | ./usr/lib64/R/library/OptM/extdata/M3.5.5.modelcov.gz |
FileSize | 1522 |
MD5 | D91103E5AA92DA56935C95CE2237748B |
SHA-1 | 001C42C073D6F9489767681F7565ABBCECF4C814 |
SHA-256 | B4842ED863926821C9A03F9B914A082E0380217356BA7B8CB7FEFD3609C94F28 |
SSDEEP | 24:X1HInWpUpZZIq2GWjzeaCgWWsUgYuWCIOigAvaCKMur9lmTjqs+oXXtaX:XhIWo29jKaCgWs8IOiVvxE+I |
TLSH | T1E231F982FA8F6C247381EEAAC87111D8413D163386A4BBFAFE14BC005911D4754958F0 |
Key | Value |
---|---|
FileName | ./usr/lib64/R/library/OptM/extdata/M3.5.8.modelcov.gz |
FileSize | 1516 |
MD5 | C03FEE7E579E2BDAFC1FB5A102B29C2B |
SHA-1 | 008F7BABA8F89ED85101E1412E14D9E0A0EA5F24 |
SHA-256 | DB7269377C0DB504B49A0A08330115931C02FA98C094D571772D1E3271AF12AB |
SSDEEP | 24:XQGpun2ILvv6j2pkjRQlVn6b3EHggVEWwKgnFhBsNN+b95UlZbNzHAX5fej8ebRo:XQ0uNDv+KksWEpKW6Fh1a9H2fej8ebiV |
TLSH | T11931F97338DC455DC56909E221519DC358A39822FB0855B7C139DE24A632E7B01A2D7E |
Key | Value |
---|---|
FileName | ./usr/lib64/R/library/OptM/R/OptM.rdx |
FileSize | 340 |
MD5 | A06B763C98F787C442D07480BA6D4081 |
SHA-1 | 0093FC8E9894A7B308EB9AFF607156248A3190EA |
SHA-256 | 3BD7C3B07705E156EEE85AD2061871C36B6FE646CA65ABB95D00895624EE7B3F |
SSDEEP | 6:XtLIDX81uWQp5P292WSAmW2/iE+Pi/ThfrxIkheTmduqtOo6fqaGu/:X2X8zQphJD3+ifiEeouqtxc7/ |
TLSH | T1CAE02837F194710BCD3146F35705015BEC19544768113F8995E7C8C800D392CC5D699C |
Key | Value |
---|---|
FileName | ./usr/lib64/R/library/OptM/extdata/M3.8.7.llik |
FileSize | 115 |
MD5 | 00AD2D681EE6AC9D60A33D13DB2C3327 |
SHA-1 | 00B811F03CEF9DC72F883E24500C03B0404CFDD6 |
SHA-256 | 0E737E1FF4AADD239BA973155FA8280B32229C24A1812CE157E29526EEFA1EEC |
SSDEEP | 3:jHFJLTsMndMpEURMQAKBcXXcGFTsMndMZDURMQAKEjRSV:jgVrPGAkERI |
TLSH | T165B0928D0005A76C419E0BAB33236283333459EA2300E0000D89CC26C00653B52A2EFB |
Key | Value |
---|---|
FileName | ./usr/lib64/R/library/OptM/extdata/M3.8.2.llik |
FileSize | 115 |
MD5 | 97E1329842DFDD7D31975E7C0EF481D7 |
SHA-1 | 02B7D2C11CE8F9139BF7FC87EB3009997647516B |
SHA-256 | C040A37DFBE81821D73076FEFC32DBEB75298CB8A547B65852D745A51ED5F5AD |
SSDEEP | 3:jHFJLTsMndMpEURMQAKBcXXcGFTsMndMDIwRMQAKFSfn:jgVrPGgIkv6n |
TLSH | T116B0928D0001A3A8C59E0BBF331393833330A9AA2308E0000E89CC26C40953B52A2EFB |
Key | Value |
---|---|
FileName | ./usr/lib64/R/library/OptM/extdata/M3.6.1.llik |
FileSize | 115 |
MD5 | 4434F577FB644D8ED38D18596FD6D295 |
SHA-1 | 02C9E839458A3F97635A305EE8AC285FF2173566 |
SHA-256 | 386D82D25C154FE54FD729DBE7D1795612B947D1F186EC9DA8D433E13E77A459 |
SSDEEP | 3:jHFJLTsMndMpEURMQAKBSd2vY1GFTsMndMPDIMQAKCUT:jgVrE1G2kD |
TLSH | T1C9B0928D000A936942DE0BAB620396C3323458AA2300E1002ECACC25C01953A23A29F7 |
Key | Value |
---|---|
FileName | ./usr/lib64/R/library/OptM/extdata/M3.5.7.modelcov.gz |
FileSize | 1529 |
MD5 | FB82F01F5AE0FD9DF283C43CFBEA6E1B |
SHA-1 | 02D31971047230F1AFF825747FE5892A1FEB553A |
SHA-256 | 25DB7D5C308DCB8898BA78D4BB809165C40109C887984100D6985DE8BC7BF21F |
SSDEEP | 24:XmdW3HrKx6WnfE2Q/y7V74oP0d02nlcuVWVQSxIx0pdCGUxcoJszLpEPlNp9NdNm:Xmg3XWnfE2yyh7tUPnWuiQSmx0CvL4eI |
TLSH | T10231DA7897050B148D2875BC31992D9151D315CD14ABA93782221C05FF5EBEEFC787EC |
Key | Value |
---|---|
FileName | ./usr/lib64/R/library/OptM/extdata/M3.4.2.modelcov.gz |
FileSize | 1524 |
MD5 | F9DEFDFE9C5BF7A46C8B0B0B786C48DD |
SHA-1 | 05D6CAC4EACC494D3B947A92646378A99CFF6DF8 |
SHA-256 | A265408F61E0ED9A31C52E7D31EAB1310BA068F570F733D6022D4DD02320FFA5 |
SSDEEP | 24:XFXwXC0+wviXVdOcVfxlGmXKHwwFX8mJJ6NRxxbVU+H3KgfrgbOXxX9EIGLFuaib:XSyfrXVdPVPdY/1y33KcrxX9EIPaiamP |
TLSH | T17D3129F19C98468F547563FB9A18BF4F2DECD698CB87B640115F8250B1828910290E4B |
Key | Value |
---|---|
FileName | ./usr/lib64/R/library/OptM/extdata/M3.4.9.cov.gz |
FileSize | 1487 |
MD5 | D640C0F2FB2928EF59B2F6C976E5139E |
SHA-1 | 061386F5C1657A32B7ACAAB55F179A61F2462DA4 |
SHA-256 | 2C1BDC406B50EF8A7FEFAF2BC6CD22DD079B920FF00BFFA78C684377FB557AC5 |
SSDEEP | 24:XbaXeUQe9AcmPJ8U0aKsMKlP8rT0RFoovhXigH6AfRDEDSPREAsfQ27tpip0R/zh:XbanLWcmPgHs1joGhMAfRjmw27t0KR/d |
TLSH | T15031F91C4A2479C16BD3993948F3AABEE23D811255635E61429365C108605476DCFD39 |
Key | Value |
---|---|
FileName | ./usr/lib64/R/library/OptM/extdata/M3.3.1.modelcov.gz |
FileSize | 1521 |
MD5 | 6D6CA0B5A67508FB1EE92D79271639EB |
SHA-1 | 0964DAF17B3955D5614492F1B2FE2F29593108CC |
SHA-256 | 94969B5F5EC396C1B7489D0148260CEAEB5F9729628842E956DEE1ACE433917A |
SSDEEP | 24:Xx/OAWjn6puJBVbUekY0MmLoo8VxW2CH9GGHTtoermIc0oIyJFEgofWpIB9J:XxGAWjDJB5UfY3mF269GzimvqkFEgo+2 |
TLSH | T137310C6D013A18F841B6D370708660F770CE9F564F6FF10166044258C25F8129379519 |