Key | Value |
---|---|
FileName | ./usr/lib64/R/library/alakazam/doc/GeneUsage-Vignette.Rmd |
FileSize | 7447 |
MD5 | 27D4803BB5F0337EB9B45FBBECD0CF33 |
SHA-1 | 0D3AC5F0509356DAFA11B1E37996C330F7BDD464 |
SHA-256 | B66210D5553974EF8E5F1E5DDCC9F3183DDE1EC98E70995D6EDF22D2D1326902 |
SSDEEP | 96:RHfH1P2esEuPYG0I3leF8lmHjx9Bq+tmFRmHLNO9nkhOi06cPsNusc2EODt0SOfU:AEI34HdbtmfmZSoPfCsxECWSOsSn8 |
TLSH | T1C8E1B72356CA0723ED5204F23DB9438EE76A9572F7E95D587C2CC3602F01AA2A1B57F4 |
hashlookup:parent-total | 5 |
hashlookup:trust | 75 |
The searched file hash is included in 5 parent files which include package known and seen by metalookup. A sample is included below:
Key | Value |
---|---|
MD5 | 09D8686A2847086D518A1536B731EF8A |
PackageArch | x86_64 |
PackageDescription | Provides methods for high-throughput adaptive immune receptor repertoire sequencing (AIRR-Seq; Rep-Seq) analysis. In particular, immunoglobulin (Ig) sequence lineage reconstruction, lineage topology analysis, diversity profiling, amino acid property analysis and gene usage. Citations: Gupta and Vander Heiden, et al (2017) <doi:10.1093/bioinformatics/btv359>, Stern, Yaari and Vander Heiden, et al (2014) <doi:10.1126/scitranslmed.3008879>. |
PackageName | R-alakazam |
PackageRelease | lp152.3.7 |
PackageVersion | 1.0.2 |
SHA-1 | E8B6926CDE6312CD37D08F549862AFAEC82721D0 |
SHA-256 | 4D9C08D72BE7FB92469A534B5E2AF44FCA831B3D2658027918BBFE16753C4B01 |
Key | Value |
---|---|
FileSize | 1905664 |
MD5 | C7337B6D8F8308F7B68B0C63B3DBBC83 |
PackageDescription | Immunoglobulin Clonal Lineage and Diversity Analysis Alakazam is part of the Immcantation analysis framework for Adaptive Immune Receptor Repertoire sequencing (AIRR-seq) and provides a set of tools to investigate lymphocyte receptor clonal lineages, diversity, gene usage, and other repertoire level properties, with a focus on high-throughput immunoglobulin (Ig) sequencing. . Alakazam serves five main purposes: * Providing core functionality for other R packages in the Immcantation framework. This includes common tasks such as file I/O, basic DNA sequence manipulation, and interacting with V(D)J segment and gene annotations. * Providing an R interface for interacting with the output of the pRESTO and Change-O tool suites. * Performing lineage reconstruction on clonal populations of Ig sequences and analyzing the topology of the resultant lineage trees. * Performing clonal abundance and diversity analysis on lymphocyte repertoires. * Performing physicochemical property analyses of lymphocyte receptor sequences. |
PackageMaintainer | Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com> |
PackageName | r-cran-alakazam |
PackageSection | gnu-r |
PackageVersion | 1.0.2-1 |
SHA-1 | A53774D42D160D09972D81360D84BEE31E16F0B0 |
SHA-256 | FDDB36F9B5177BD8CC72DB3924667304B5549C543CAA0DE9B5B8FF31712E5773 |
Key | Value |
---|---|
MD5 | 1FA3E147C1D8BBD8E6CC7A1BA335B9BD |
PackageArch | x86_64 |
PackageDescription | Provides methods for high-throughput adaptive immune receptor repertoire sequencing (AIRR-Seq; Rep-Seq) analysis. In particular, immunoglobulin (Ig) sequence lineage reconstruction, lineage topology analysis, diversity profiling, amino acid property analysis and gene usage. Citations: Gupta and Vander Heiden, et al (2017) <doi:10.1093/bioinformatics/btv359>, Stern, Yaari and Vander Heiden, et al (2014) <doi:10.1126/scitranslmed.3008879>. |
PackageName | R-alakazam |
PackageRelease | lp153.3.3 |
PackageVersion | 1.0.2 |
SHA-1 | 94E529702D59999BC5B94D3A1E55FF7AE4A58B28 |
SHA-256 | 8A1FCAA270CE68784D93516E59D4A97B1BB0DEAE095EB472A0F2AEF01A86BF98 |
Key | Value |
---|---|
MD5 | E2427ABFF54D5392AA41E65E7B06769E |
PackageArch | x86_64 |
PackageDescription | Provides methods for high-throughput adaptive immune receptor repertoire sequencing (AIRR-Seq; Rep-Seq) analysis. In particular, immunoglobulin (Ig) sequence lineage reconstruction, lineage topology analysis, diversity profiling, amino acid property analysis and gene usage. Citations: Gupta and Vander Heiden, et al (2017) <doi:10.1093/bioinformatics/btv359>, Stern, Yaari and Vander Heiden, et al (2014) <doi:10.1126/scitranslmed.3008879>. |
PackageName | R-alakazam |
PackageRelease | lp154.3.1 |
PackageVersion | 1.0.2 |
SHA-1 | 08C939D15D7D0A82E08D1605A735DE7B6F91EDA1 |
SHA-256 | 31634BDE1467DEDB7E6BAA7340B4EA78DD45AE7F6410AC3B76305743A05A5198 |
Key | Value |
---|---|
MD5 | 27DEBB80C913C5021FE40D299BADE8E5 |
PackageArch | x86_64 |
PackageDescription | Provides methods for high-throughput adaptive immune receptor repertoire sequencing (AIRR-Seq; Rep-Seq) analysis. In particular, immunoglobulin (Ig) sequence lineage reconstruction, lineage topology analysis, diversity profiling, amino acid property analysis and gene usage. Citations: Gupta and Vander Heiden, et al (2017) <doi:10.1093/bioinformatics/btv359>, Stern, Yaari and Vander Heiden, et al (2014) <doi:10.1126/scitranslmed.3008879>. |
PackageName | R-alakazam |
PackageRelease | 3.35 |
PackageVersion | 1.0.2 |
SHA-1 | 0007FBFF83F49F4FB6F1EE69E816F2EC221CC26C |
SHA-256 | CA7168D4F6EE1323F4456EA15F7D84920D592618BD901DF35AF1E44BC3C6C38B |