| Key | Value |
|---|---|
| FileSize | 5583076 |
| MD5 | DF2AFE3FABD765784C5782E3CC321562 |
| PackageDescription | tools for early stage alignment file processing This package contains some tools for processing BAM files including . bamsormadup: parallel sorting and duplicate marking bamcollate2: reads BAM and writes BAM reordered such that alignment or collated by query name bammarkduplicates: reads BAM and writes BAM with duplicate alignments marked using the BAM flags field bammaskflags: reads BAM and writes BAM while masking (removing) bits from the flags column bamrecompress: reads BAM and writes BAM with a defined compression setting. This tool is capable of multi-threading. bamsort: reads BAM and writes BAM resorted by coordinates or query name bamtofastq: reads BAM and writes FastQ; output can be collated or uncollated by query name |
| PackageMaintainer | Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com> |
| PackageName | biobambam2 |
| PackageSection | science |
| PackageVersion | 2.0.95-1 |
| SHA-1 | 0BEF992BA3128E1A4CC5144AEE9D64BD91B3960A |
| SHA-256 | 3F5B5C3DA2F574DA528BE853E962CEE9492347EF431B67A9D78260029AD68A8A |
| hashlookup:children-total | 114 |
| hashlookup:trust | 50 |
The searched file hash includes 114 children files known and seen by metalookup. A sample is included below:
| Key | Value |
|---|---|
| FileName | ./usr/bin/bamcat |
| FileSize | 567068 |
| MD5 | A03B86D524EDE8D5D2E9FB237C406814 |
| SHA-1 | 04026445C2A3369120170D52FAB8055102A23D40 |
| SHA-256 | 5F86945F2E37718102E34ADC63B1BC97AA035375431286271928F9456697C21A |
| SSDEEP | 12288:ck1AnJNTpS5QK3cJRzmAaBFIOohgj45ORHF6ob0LavGzYtmNID:ckWnJN91K3kzy4ORHF6ob0LavGzcmy |
| TLSH | T1DAC4AF23D27EBF11FDDB29366A8689984983CC859C6C54D7BA828D0F2EBD591331D7C0 |
| Key | Value |
|---|---|
| FileName | ./usr/bin/bam12strip |
| FileSize | 267940 |
| MD5 | 3880E939123DEA8B0D73D0BAF57A5E06 |
| SHA-1 | 069F4898DDE6B31069F4BD644BB8493B5BC09AA1 |
| SHA-256 | DBAE7EA4EE97B745091EF072D27B2ECBC1CE3FEA5AE2291EA1EFEBDE6929659A |
| SSDEEP | 6144:iQU/XKP7mQMKzoCydJxIaGaTwGRqenTpuWhjz+OmQBH:iq0fRqe99z+BQB |
| TLSH | T1AA44AE13F17FBE16EDC726346A474A6C8C82CC9E8D6C0A97A9558C0F19F8696731DBC0 |
| Key | Value |
|---|---|
| FileName | ./usr/bin/bamrefinterval |
| FileSize | 608028 |
| MD5 | 90609C20D9910E47411B531C9F0D2330 |
| SHA-1 | 09F3772B0365C09FACCAE8667C47587B4AB9F4A6 |
| SHA-256 | ECF60A8A6F402D63AD183407C3DC62B4934663503D5E925D62EEB76B45ACF1D9 |
| SSDEEP | 12288:BUHMBQTh0jyEQUrbZaHD1cf5JxkRHFvob0LrNG9GjYmTv:BkMBQ0j7nriCNkRHFvob0LrNG9Ij |
| TLSH | T110D4AF13D67EBE02FDCB25346A8789986892CC498DAC54D7BA438D0F29FC5A6331D7C4 |
| Key | Value |
|---|---|
| FileName | ./usr/bin/bamrefextract |
| FileSize | 521996 |
| MD5 | 0337028D22E13ECD3A3E4FD4FF83C92C |
| SHA-1 | 1547D1DBBE8FBE5C75D26B46CF46E38271646F7A |
| SHA-256 | F06B9835003CBD0084EFEF7367A9FC4ADEBEF5D8DB5B10543C1733A48E474997 |
| SSDEEP | 12288:C+r24p+jum1ILxztuHRHFSob0LXDGi6h:C+r24ojlIaRHFSob0LXDGi6 |
| TLSH | T1DCB49E23D27EBE12FDCB29346A8788B80882CC559D6C50DBBA468D4F2AFD591331D7C4 |
| Key | Value |
|---|---|
| FileName | ./usr/bin/bamfilterheader2 |
| FileSize | 173716 |
| MD5 | EDE3516C9FBB9B764B8C80ABD6F4404F |
| SHA-1 | 17D9F018283614255E8FC9415C5F71799DA3B9CF |
| SHA-256 | 018921DD2C8ED68DD90E8880BBC3F9AC1DFCF2689C1D70C7CA2F499B23B19CEF |
| SSDEEP | 3072:Efke2tD/Jpc7kZ0OBa0SL3B6TTkXUy6XIbDPPRShOy6czOvYi9CuOF7:okB7c7kZLa0SLB6Hkky6YbDPPRe7OvYp |
| TLSH | T1B5049E07E63FBE27FDCB0A70658B4B58D483CC858E78C157E6519C1B09BA696633E780 |
| Key | Value |
|---|---|
| FileName | ./usr/share/man/man1/bamchecksort.1.gz |
| FileSize | 653 |
| MD5 | 38F0E9A258692F4719A26E9B9289DADF |
| SHA-1 | 1ADD28A41A9A6B92EF8AF29D56151835032C1077 |
| SHA-256 | 7A96445518E1E03E60ECB64D56EEBA46E174B3FD8C78558008FD2E417BB8FF82 |
| SSDEEP | 12:XFclNBUF0q1oBVJVF/ZEoy3HS6xKpiEK+4evygTNbO2ZKisBCDHG3qKq9iR:XFclkW7N2B55Emev7TNbOsK/CaqKYiR |
| TLSH | T111F023149B4093E985F9CFB4E501D9097AA797DA834CFA985190F11456C6AC433D0C84 |
| Key | Value |
|---|---|
| FileName | ./usr/share/man/man1/bammerge.1.gz |
| FileSize | 1453 |
| MD5 | D860932900A7A3AAF7CA564AB85F249F |
| SHA-1 | 1E9DFB3EA213BB8C05C451EC5B022B9BE2B9638F |
| SHA-256 | 05AF51B36ECE5FA49D1EBBE88D7EA7EA3E2FD80F1C782FF4C5AC1B53143E96C7 |
| SSDEEP | 24:XiLQBMJY7joJA/l+RtO47lcR389vdBgYPIJyRh9wOALGYWoAZ1uLJJU97zpA:X7MJgj/lGkWlcVWdBgcIEdIDLAD6U9pA |
| TLSH | T1DA311B4F6F75873EFD03DDC1559653E3AF6A4CD032554600315048A8823FA1E31AE4C0 |
| Key | Value |
|---|---|
| FileName | ./usr/share/man/man1/bamfilterheader2.1.gz |
| FileSize | 1194 |
| MD5 | 449AFE4688B7F42F7A497906C05C5664 |
| SHA-1 | 1F50C010DC15F053492393EAD03C09ADCB4C3599 |
| SHA-256 | B5661483DC534CA9B8E09FA4C3F9629791DE891A4B2E495F99FDA7D1A229BA55 |
| SSDEEP | 24:XvHC4O1DLo9P7z5oemjmGdFsVzDUUtLsWYCZIp06jedOYsz:XxO1/o9TzSLmGTsVzDUUtYC20pOYsz |
| TLSH | T156210A9040A51949BC2DCC1FAE53BC8238421B8D3344061D48C135361192AE43BDF915 |
| Key | Value |
|---|---|
| FileName | ./usr/bin/bamsplitdiv |
| FileSize | 190100 |
| MD5 | 9F82BB5608BBB9F1662D881086707D80 |
| SHA-1 | 2120E68531DA3AD7DEAA483BAE26B3EF99B42384 |
| SHA-256 | 49D4AE56DED53195AB767B785355E7A7DBACA4073AB07684DA31F0726A30E97D |
| SSDEEP | 3072:MtryTMKmyY8iMyafEmfPIVR6vxYNRsp/hMhMBUtn+hsuyhcL8x5LCfw:MhaMKmyYN1R6KK/sMC+erb5Lsw |
| TLSH | T1BC049E53E23FBF12EDC72BB42547466C4882CC858D9C8786E5918C2F2DFAA85761E7C4 |
| Key | Value |
|---|---|
| FileName | ./usr/share/man/man1/bamadapterclip.1.gz |
| FileSize | 1215 |
| MD5 | CDFED4AF34BD96828DE5BAE7554B1FEF |
| SHA-1 | 2154638D2F717251D78F035429599C6921EB0C06 |
| SHA-256 | 711890CD1063626E6E2C1C1FDEBBC3383AC610A59ED3650AB6002DCDB5E0C4BF |
| SSDEEP | 24:X6DBHTKGiELcFx58+N8U3dIPgVm1INgQNsf/ndEuTibqasm7O:XUBdirJN8YGoVo5jf/ndEu4iIO |
| TLSH | T17721B4570CF4AE4E8168232FAD167415BE6B2A370E39C0636150499A66AA0450D3F636 |