| FileSize | 2796104 |
| MD5 | 83090E34E123FEB5E86CDC146CCE57B1 |
| PackageDescription | set of programs implementing The OpenMS Proteomic Pipeline
TOPP (the OpenMS proteomic pipeline) is a pipeline for the analysis
of HPLC/MS data. It consists of a set of numerous small applications
that can be chained together to create analysis pipelines tailored
for a specific problem. The applications make use of the libopenms
library. Some examples of these applications are :
.
- TOPPView: A viewer for mass spectrometry data.
- TOPPAS: An assistant for GUI-driven TOPP workflow design.
- DTAExtractor: Extracts spectra of an MS run file to several
files in DTA format.
- FileConverter: Converts between different MS file formats.
- FileFilter: Extracts or manipulates portions of data from peak,
feature or consensus feature files.
- SpectraMerger: Merges spectra from an LC/MS map, either by
precursor or by RT blocks.
- BaselineFilter: Removes the baseline from profile spectra using a
top-hat filter.
- InternalCalibration: Applies an internal calibration.
- PTModel: Trains a model for the prediction of proteotypic
peptides from a training set.
- RTPredict: Predicts retention times for peptides using a model
trained by RTModel.
- ExecutePipeline: Executes workflows created by TOPPAS. |
| PackageMaintainer | The Debichem Group <debichem-devel@lists.alioth.debian.org> |
| PackageName | topp |
| PackageSection | science |
| PackageVersion | 2.6.0+cleaned1-3 |
| SHA-1 | 4CF33AA9B0E7E166E408C0B8FDBD6B1486B1149D |
| SHA-256 | 2B98001134204FE51FA1083F77FDDEC6B233EC9D61804C071921B84FEC55DBA9 |