Parents (Total: 2)

The searched file hash is included in 2 parent files which include package known and seen by metalookup. A sample is included below:

Key	Value
FileSize	200316
MD5	11D91505B6D4714F4EF4D68BED554800
PackageDescription	manage nucleotide sequencing read data To facilitate the multiple phases of the dazzler assembler, all the read data is organized into what is effectively a database of the reads and their meta-information. The design goals for this data base are as follows: * The database stores the source Pacbio read information in such a way that it can re-create the original input data, thus permitting a user to remove the (effectively redundant) source files. This avoids duplicating the same data, once in the source file and once in the database. * The data base can be built up incrementally, that is new sequence data can be added to the data base over time. * The data base flexibly allows one to store any meta-data desired for reads. This is accomplished with the concept of *tracks* that implementors can add as they need them. * The data is held in a compressed form equivalent to the .dexta and .dexqv files of the data extraction module. Both the .fasta and .quiva information for each read is held in the data base and can be recreated from it. The .quiva information can be added separately and later on if desired. * To facilitate job parallel, cluster operation of the phases of the assembler, the database has a concept of a *current partitioning* in which all the reads that are over a given length and optionally unique to a well, are divided up into *blocks* containing roughly a given number of bases, except possibly the last block which may have a short count. Often programs can be run on blocks or pairs of blocks and each such job is reasonably well balanced as the blocks are all the same size. One must be careful about changing the partition during an assembly as doing so can void the structural validity of any interim block-based results.
PackageMaintainer	Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
PackageName	dazzdb
PackageSection	science
PackageVersion	1.0+git20201103.8d98c37-1
SHA-1	B1CD229D80191D3169D76FA420BA74933CA2B319
SHA-256	F3F475C901E8C9A98D6BB8643A816208B69278D9C78CBEF7EAD37A30A183F74D

Key	Value
FileSize	200504
MD5	301D42C05AED189920479B51F25C9691
PackageDescription	manage nucleotide sequencing read data To facilitate the multiple phases of the dazzler assembler, all the read data is organized into what is effectively a database of the reads and their meta-information. The design goals for this data base are as follows: * The database stores the source Pacbio read information in such a way that it can re-create the original input data, thus permitting a user to remove the (effectively redundant) source files. This avoids duplicating the same data, once in the source file and once in the database. * The data base can be built up incrementally, that is new sequence data can be added to the data base over time. * The data base flexibly allows one to store any meta-data desired for reads. This is accomplished with the concept of *tracks* that implementors can add as they need them. * The data is held in a compressed form equivalent to the .dexta and .dexqv files of the data extraction module. Both the .fasta and .quiva information for each read is held in the data base and can be recreated from it. The .quiva information can be added separately and later on if desired. * To facilitate job parallel, cluster operation of the phases of the assembler, the database has a concept of a *current partitioning* in which all the reads that are over a given length and optionally unique to a well, are divided up into *blocks* containing roughly a given number of bases, except possibly the last block which may have a short count. Often programs can be run on blocks or pairs of blocks and each such job is reasonably well balanced as the blocks are all the same size. One must be careful about changing the partition during an assembly as doing so can void the structural validity of any interim block-based results.
PackageMaintainer	Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
PackageName	dazzdb
PackageSection	science
PackageVersion	1.0+git20201103.8d98c37-1+deb11u1
SHA-1	3CE10A3E8406E328373E55C4793B953D7C1A6E9A
SHA-256	86CFE7B9DD9005FFFA53D3987C128D89BCF442FC976F0948028EBA1806F8AA6A