| FileSize | 3112588 |
| MD5 | B3D011986EE4B29499C895D5268B471F |
| PackageDescription | set of programs implementing The OpenMS Proteomic Pipeline
TOPP (the OpenMS proteomic pipeline) is a pipeline for the analysis
of HPLC/MS data. It consists of a set of numerous small applications
that can be chained together to create analysis pipelines tailored
for a specific problem. The applications make use of the libopenms
library. Some examples of these applications are :
.
- TOPPView: A viewer for mass spectrometry data.
- TOPPAS: An assistant for GUI-driven TOPP workflow design.
- DTAExtractor: Extracts spectra of an MS run file to several
files in DTA format.
- FileConverter: Converts between different MS file formats.
- FileFilter: Extracts or manipulates portions of data from peak,
feature or consensus feature files.
- SpectraMerger: Merges spectra from an LC/MS map, either by
precursor or by RT blocks.
- BaselineFilter: Removes the baseline from profile spectra using a
top-hat filter.
- InternalCalibration: Applies an internal calibration.
- PTModel: Trains a model for the prediction of proteotypic
peptides from a training set.
- RTPredict: Predicts retention times for peptides using a model
trained by RTModel.
- ExecutePipeline: Executes workflows created by TOPPAS. |
| PackageMaintainer | Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com> |
| PackageName | topp |
| PackageSection | science |
| PackageVersion | 2.6.0+cleaned1-2 |
| SHA-1 | 7DB1A4FFF002C5EE28BE25AE5B33DDBD4C3CE039 |
| SHA-256 | 7612BBAD1426B9AB9E9A9BA46FCB5A09C88005C739FA8A3F8870DC9C547F48D5 |